PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn176741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 227aa    MW: 26233.7 Da    PI: 6.5094
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn176741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.22.3e-07411012888
        FAR1  28 itkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                 + +++    +egkr+++k++ +   ++r+etr gC a +kvk  + ++++ v +l+  Hn  
  Achn176741  41 FFNNNVPIEEEGKRRKDKRD-HMYTSHRPETRFGCLAWMKVKYCRpTEQFDVVELNPVHNYI 101
                 55555556789999999999.89999*******************9**************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEIEINYSSP LSCEVLDIDG NYARDDCDFR RKLEFKDDDN FFNNNVPIEE EGKRRKDKRD  60
HMYTSHRPET RFGCLAWMKV KYCRPTEQFD VVELNPVHNY IVSTPSKTHL HKSHRKFGVA  120
QAAIVNMEND CGIAPKATVA FMARQVGGRE NLGFIPQDYK NYLRSKRTMQ MKIGDTSGVL  180
EYLQKMQLQD PNFFYAIQVD EDDLITNIFW ADAKNDGRLG LLWGCG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021817174.13e-68protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024164275.12e-66protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2R6QX941e-107A0A2R6QX94_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGXP_008246048.11e-64(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-22FAR1-related sequence 5