PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn177831

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 456aa MW: 52862.7 Da PI: 6.3725

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn177831	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	37.6	4.5e-12	319	358	3	42
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIk 42 i+ledl+ +F + +dAAk Lgv++++ Kr CR++GIk Achn177831 319 RVITLEDLQPHFGRKHADAAKILGVSVSTFKRYCRRNGIK 358 569************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	11.297	304	389	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-12	321	358	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MYFVSSQRKY DHTILKESDG AYRIFLLYII VHIYAQIKEL NDLIEARLVE KLSKRRSGTA 60 KKKRSGRYRT QERESEVERE REMDPKLKEV SQLFERFKAA FIRNDFDTCT KLLSKLKVLL 120 TEFRSLPPLF EETPNAIDEL TIARDIYEHA VVLSVKIEDQ DAFERDFFQL KPYYTDACLL 180 FADNLKDLKN IRKQLYSAAE YFERSYDKDD QKHIVVESVK DYITKAIVNT VDHLGSVAYK 240 VNHFLDEKVD QFSGTELQFS CIEQELRQQL NRCSLEEETS VEIINPSMDE KFDSRQLDSS 300 EQQMKNAMET PERKRQTKRV ITLEDLQPHF GRKHADAAKI LGVSVSTFKR YCRRNGIKWK 360 NVNEYSQALE LDPKHRETPG EKTTPSCKTP SITGQAETGN QVLDSGMVEI KGNLPEQNNF 420 QTDNVLKEVS RETSTSHGLC PYNCPEMDLS ASYTS*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MYFVSSQRKY DHTILKESDG AYRIFLLYII VHIYAQIKEL NDLIEARLVE KLSKRRSGTA  60
KKKRSGRYRT QERESEVERE REMDPKLKEV SQLFERFKAA FIRNDFDTCT KLLSKLKVLL  120
TEFRSLPPLF EETPNAIDEL TIARDIYEHA VVLSVKIEDQ DAFERDFFQL KPYYTDACLL  180
FADNLKDLKN IRKQLYSAAE YFERSYDKDD QKHIVVESVK DYITKAIVNT VDHLGSVAYK  240
VNHFLDEKVD QFSGTELQFS CIEQELRQQL NRCSLEEETS VEIINPSMDE KFDSRQLDSS  300
EQQMKNAMET PERKRQTKRV ITLEDLQPHF GRKHADAAKI LGVSVSTFKR YCRRNGIKWK  360
NVNEYSQALE LDPKHRETPG EKTTPSCKTP SITGQAETGN QVLDSGMVEI KGNLPEQNNF  420
QTDNVLKEVS RETSTSHGLC PYNCPEMDLS ASYTS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	63	KRRSGTAKKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ869862	2e-94	DQ869862.1 Camellia sinensis 26S proteasome regulatory particle non-ATPase subunit 12 mRNA, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-07	Nin-like family protein