PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn177841

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 898aa MW: 99085.9 Da PI: 6.1361

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn177841	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.7e-29	612	663	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI RWP+Rki+++ Achn177841 612 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGITRWPSRKINKV 663 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.996	598	683	IPR003035	RWP-RK domain
Pfam	PF02042	6.8E-26	616	663	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.87E-22	796	887	No hit	No description
PROSITE profile	PS51745	24.155	802	884	IPR000270	PB1 domain
SMART	SM00666	2.9E-24	802	884	IPR000270	PB1 domain
Pfam	PF00564	4.1E-18	802	883	IPR000270	PB1 domain
CDD	cd06407	5.30E-37	803	883	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-25	803	884	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MSFGDVCNEV VILVGLNVVD HREKTPAMSE ADEENRSSLP KSREPLMDLD LDLDGSWPFD 60 HNFSANLTSP FFISSSEQPC SPLWAFSDDN GDKLAGDATS TLAGGHRLSE YPRLFSCNPE 120 SVTESQAGAG NKRRLSTPRL GLTPIDYPDG PCVIKERMTQ ALRYLKESTE QHVLAQVWAP 180 VKNGGRYVLT TSGQPFVLDA HSNGLHQYRM VSLMYMFSVD GESDGVLGLP GRVFQQKLPE 240 WTPNVQYYSS KEYPRLTHAL HCNVQGTLAL PVFEPSGQSC IGVLELIMTS PRINYAPEVD 300 KVCKALEAVN LKSSEILDHP NTQICNEGRQ KALVEILEIL TVVCETHKLP LAQTWVPCRH 360 RSVLANGGGL KKSCSSFDGS CMGQICMSTT EVAFYVVDAH MWGFREACAE HHLQKGQGVA 420 GRAFASHNLC FCEDITQFCK TEYPLVHYAR MFGLTSSFAI CLRSTHTGND DYILEFFLPH 480 HIRDNRHQRT LLDSILVTMK QHFWSLMVTS GKELEEEGRC VDIIKASMDE KLDSGLQHDQ 540 ISQSAILPQD PEVLPNAPEM VNLESQEQQL RIEVDAKNSG GSVGGAGGTQ NVVSLLEQKN 600 LSKKRERKRG KAEKSISLEV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GITRWPSRKI 660 NKVNRSLSRL KRVIESVQGA EGAFTLTSIA TSSLPVAVNP ISWPASVNGS NQQNSGGYKP 720 SELMEENNES TILNKPGSQG HDAATNQMLQ DGVLHREEVV HEQNEFLPEL GEGSSQSKTG 780 SGSREESTGT PTSHGSCQEV KTMTIKATYK EDIIRFRLSL DSGIARLKEE VAKRLKLEMG 840 TFDIKYLDDD HEWVLIACDA DLQECQDISK SSGSNMIRVL VHDVSANLGS SCESTGR*

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MSFGDVCNEV VILVGLNVVD HREKTPAMSE ADEENRSSLP KSREPLMDLD LDLDGSWPFD  60
HNFSANLTSP FFISSSEQPC SPLWAFSDDN GDKLAGDATS TLAGGHRLSE YPRLFSCNPE  120
SVTESQAGAG NKRRLSTPRL GLTPIDYPDG PCVIKERMTQ ALRYLKESTE QHVLAQVWAP  180
VKNGGRYVLT TSGQPFVLDA HSNGLHQYRM VSLMYMFSVD GESDGVLGLP GRVFQQKLPE  240
WTPNVQYYSS KEYPRLTHAL HCNVQGTLAL PVFEPSGQSC IGVLELIMTS PRINYAPEVD  300
KVCKALEAVN LKSSEILDHP NTQICNEGRQ KALVEILEIL TVVCETHKLP LAQTWVPCRH  360
RSVLANGGGL KKSCSSFDGS CMGQICMSTT EVAFYVVDAH MWGFREACAE HHLQKGQGVA  420
GRAFASHNLC FCEDITQFCK TEYPLVHYAR MFGLTSSFAI CLRSTHTGND DYILEFFLPH  480
HIRDNRHQRT LLDSILVTMK QHFWSLMVTS GKELEEEGRC VDIIKASMDE KLDSGLQHDQ  540
ISQSAILPQD PEVLPNAPEM VNLESQEQQL RIEVDAKNSG GSVGGAGGTQ NVVSLLEQKN  600
LSKKRERKRG KAEKSISLEV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GITRWPSRKI  660
NKVNRSLSRL KRVIESVQGA EGAFTLTSIA TSSLPVAVNP ISWPASVNGS NQQNSGGYKP  720
SELMEENNES TILNKPGSQG HDAATNQMLQ DGVLHREEVV HEQNEFLPEL GEGSSQSKTG  780
SGSREESTGT PTSHGSCQEV KTMTIKATYK EDIIRFRLSL DSGIARLKEE VAKRLKLEMG  840
TFDIKYLDDD HEWVLIACDA DLQECQDISK SSGSNMIRVL VHDVSANLGS SCESTGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028082392.1	0.0	protein NLP6-like
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A2R6PIF8	0.0	A0A2R6PIF8_ACTCH; Uncharacterized protein
STRING	VIT_02s0025g02070.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13879	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]