PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn178041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family G2-like
Protein Properties Length: 226aa    MW: 24600.4 Da    PI: 6.5551
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn178041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.32.9e-123054125
     G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                kprlrWt +LH+rFv+av++LGG++
  Achn178041 30 KPRLRWTADLHDRFVDAVTKLGGPD 54
                79*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-112762IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-83055IPR006447Myb domain, plants
PfamPF143793.1E-2582129IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDRGYGGGGG GGGGSQYGFE SGVVVSRDPK PRLRWTADLH DRFVDAVTKL GGPDSGSYRD  60
YNVYSSGATT SSSGVNSEPG EMPIAEALRY QIEVQKRLQE QLEVQKKLQM RIEAQGKYLQ  120
SILEKAQKSP TLDMNCSGSL EATRSQLTNF NLALSNLMEN MDGESRNGNI TEKKILEDIH  180
KNANRSLYLG KEEENKAIKF RIGGGSINFD LNTRGSYDFI GASGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028080374.11e-104myb family transcription factor PHL11 isoform X1
TrEMBLA0A2R6PHX91e-136A0A2R6PHX9_ACTCH; Myb family transcription factor
STRINGSolyc08g076010.2.14e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44162139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.14e-31G2-like family protein