PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn178981
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 651aa    MW: 72427.8 Da    PI: 6.5962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn178981genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-1050109154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksL 54 
                 r++ +  rE+ RRdr+N+ f eL ++l ++        ++ +K++Ka+iL+ +++ +k+L
  Achn178981  50 RKVQKADREKLRRDRLNDQFLELGKVLVNNLaatkyaDPDRPKNDKASILTDTIQIVKDL 109
                 5677889**********************666****8788888*************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-1248128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.36349109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1249132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-850113No hitNo description
PfamPF000108.9E-850109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-855115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5144042.069280472IPR000652Triosephosphate isomerase
Gene3DG3DSA:3.20.20.701.2E-54290472IPR013785Aldolase-type TIM barrel
SuperFamilySSF513516.41E-58290500IPR000652Triosephosphate isomerase
CDDcd003115.39E-82290499IPR000652Triosephosphate isomerase
PfamPF001211.2E-24290382IPR000652Triosephosphate isomerase
PfamPF001217.6E-19404472IPR000652Triosephosphate isomerase
PROSITE profilePS5118619.155441610IPR000182GNAT domain
PROSITE patternPS001710462472IPR020861Triosephosphate isomerase, active site
Gene3DG3DSA:3.20.20.702.2E-7473498IPR013785Aldolase-type TIM barrel
PROSITE profilePS5144010.413473513IPR000652Triosephosphate isomerase
SuperFamilySSF557291.77E-22494612IPR016181Acyl-CoA N-acyltransferase
Gene3DG3DSA:3.40.630.307.4E-25499610IPR016181Acyl-CoA N-acyltransferase
CDDcd043017.34E-9501568No hitNo description
PfamPF005833.5E-14507587IPR000182GNAT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0004807Molecular Functiontriose-phosphate isomerase activity
GO:0008080Molecular FunctionN-acetyltransferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MDHLNHDAFC QSIQVPNPST TEFRQPPPVP VRLHPDSRPE AELKDGATAR KVQKADREKL  60
RRDRLNDQFL ELGKVLVNNL AATKYADPDR PKNDKASILT DTIQIVKDLT AQVNRLKAEY  120
TTLTEESREL TQEKNDLREE KASLKSDIEN LNGQYQQRLR ATFPWATMDH SVMMHPPSYP  180
MPMPMPVPIP PGPIPMHPSL QPYPFFGNQN HGVIPNPCST FVPFVTPNAM IDQQSTQYMS  240
PIMQPGSSKQ DSRNKASDRQ EESKIEKSEA SNDVATDLEL KTPGSTADEN GTTESIGKLV  300
SDLNKTKLET DVDVVVAPPF VYIDQVKNSL TDRIEISAQN SWIGKGGAFT GEISVEQLKD  360
IGCKWVVLGH SERRHVIGED DQARVIYSMM NMGHIFNTRL KNFHLQFIGK KAAYALSEGL  420
GVIACIGELL KEREEGKTFE VCFKQMKAFA DAVPSWDNVV VAYEPVWAIG TGSVNGGNCA  480
ELAKQEDIDG FLVGGASLKL LYVAEDYGGK IVGYVLAKME EETSECHGHI TSLAVLRTHR  540
KLGLATKLMT AAQNAMEQVF GAEYVSLHVR KSNRAAFNLY TETLGYKIHD VEAKYYADGE  600
DAYDMRKQLK GKQYHHHHQV HHHHHHHHHG GGCCSGEAVK SGVAKTESVE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ohq_A1e-10129049916238Triosephosphate isomerase, chloroplastic
4ohq_B1e-10129049916238Triosephosphate isomerase, chloroplastic
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54562434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-75bHLH family protein