PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn179461

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

HB-other

Protein Properties

Length: 493aa MW: 55813.6 Da PI: 6.5137

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn179461	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	1.9e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+e+Le+++ +++yps+e++ e+A +lgLte+qV+ WF+ rR k+k+ Achn179461 20 KKRRFKTPSQVEALEKFYSEHKYPSEEMKSEIAGSLGLTEKQVSGWFCHRRLKDKN 75 89999************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-21	5	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-17	7	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.844	16	76	IPR001356	Homeobox domain
SMART	SM00389	7.4E-20	18	80	IPR001356	Homeobox domain
CDD	cd00086	3.07E-17	20	77	No hit	No description
Pfam	PF00046	4.5E-17	20	74	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MVESYAVHSE DNNTPPEKSK KRRFKTPSQV EALEKFYSEH KYPSEEMKSE IAGSLGLTEK 60 QVSGWFCHRR LKDKNSQHGE VPANGRQDRS SGIIQEYVSG HRQDSCSSTK QGNNRHFIPK 120 ELESRRFTGQ DYSAADLAYE HGHDPNGNDS DTSSESSLPL QYRVHHQNGD PFDMATSRYL 180 PQDENMPPIN SMGIRPRIGP SGYLKVKVPV ENVAITAVKR QLGRHYREDG PALGVEFDPL 240 PPGAFESSNK DPVNEPCHLG DPDLRPSPDF SRIYSQPNTS MRYQVYNSKM SSQDADLEGS 300 SFKIMRRFDP CENSIGHQPK PKPILPNRTN PFPGWNSSIE MDEASAGEIP VYGSCKMRAK 360 PDLEGRRRVS VSRHHLHPYG YQVTDGQREE PWLCDTYAVT TEDAHREHFE SKYSNITRKP 420 REALDMKDIE LSRRMAKVAN GCWDEFPQQQ CAKEALMGER RQWTNTIKRS AVDDQPSSFS 480 EDETAEASSS LD*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MVESYAVHSE DNNTPPEKSK KRRFKTPSQV EALEKFYSEH KYPSEEMKSE IAGSLGLTEK  60
QVSGWFCHRR LKDKNSQHGE VPANGRQDRS SGIIQEYVSG HRQDSCSSTK QGNNRHFIPK  120
ELESRRFTGQ DYSAADLAYE HGHDPNGNDS DTSSESSLPL QYRVHHQNGD PFDMATSRYL  180
PQDENMPPIN SMGIRPRIGP SGYLKVKVPV ENVAITAVKR QLGRHYREDG PALGVEFDPL  240
PPGAFESSNK DPVNEPCHLG DPDLRPSPDF SRIYSQPNTS MRYQVYNSKM SSQDADLEGS  300
SFKIMRRFDP CENSIGHQPK PKPILPNRTN PFPGWNSSIE MDEASAGEIP VYGSCKMRAK  360
PDLEGRRRVS VSRHHLHPYG YQVTDGQREE PWLCDTYAVT TEDAHREHFE SKYSNITRKP  420
REALDMKDIE LSRRMAKVAN GCWDEFPQQQ CAKEALMGER RQWTNTIKRS AVDDQPSSFS  480
EDETAEASSS LD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	24	KKRRFK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028089174.1	0.0	homeobox-DDT domain protein RLT1-like isoform X2
TrEMBL	A0A2R6PFH6	0.0	A0A2R6PFH6_ACTCH; Homeobox-DDT domain protein
STRING	VIT_06s0009g03530.t01	1e-143	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-62	HB-other family protein