PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn179541
Common NameNAC4
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 246aa    MW: 27781.4 Da    PI: 9.7213
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn179541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.1e-51141381128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelvv+yLk+k+ + +l++ ++i+e+d++k++PwdLp     + +e yfFs+r+ ky++g+r+nrat sgyWkatg dk++++  +++
  Achn179541  14 LPPGFRFHPTDEELVVQYLKRKAFSCPLPA-SIIPEFDVCKSDPWDLPG---DSAQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIVTCrSNQ 108
                 79****************************.89***************3...456799*********************************99864778 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kktLvfy+g+ p+g++tdW+mheyrl
  Achn179541 109 VVGMKKTLVFYRGKPPRGSRTDWIMHEYRL 138
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-6010164IPR003441NAC domain
PROSITE profilePS5100557.9114164IPR003441NAC domain
PfamPF023655.3E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEKLNVVKNG VIRLPPGFRF HPTDEELVVQ YLKRKAFSCP LPASIIPEFD VCKSDPWDLP  60
GDSAQERYFF STREAKYPNG NRSNRATGSG YWKATGIDKQ IVTCRSNQVV GMKKTLVFYR  120
GKPPRGSRTD WIMHEYRLVG AETEKNNSTQ TTMENWVLCR IFVKKRSTKN DQEITQLNNC  180
DTVKTLGKTG PVFFDFLAKK RTDLNLTPAS SSSGSSVVTQ VSFHESDDHE ESSSCNSFSS  240
FKRKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-541216915170NO APICAL MERISTEM PROTEIN
1ut4_B1e-541216915170NO APICAL MERISTEM PROTEIN
1ut7_A1e-541216915170NO APICAL MERISTEM PROTEIN
1ut7_B1e-541216915170NO APICAL MERISTEM PROTEIN
3swm_A1e-541216918173NAC domain-containing protein 19
3swm_B1e-541216918173NAC domain-containing protein 19
3swm_C1e-541216918173NAC domain-containing protein 19
3swm_D1e-541216918173NAC domain-containing protein 19
3swp_A1e-541216918173NAC domain-containing protein 19
3swp_B1e-541216918173NAC domain-containing protein 19
3swp_C1e-541216918173NAC domain-containing protein 19
3swp_D1e-541216918173NAC domain-containing protein 19
4dul_A1e-541216915170NAC domain-containing protein 19
4dul_B1e-541216915170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3190530.0KF319053.1 Actinidia chinensis NAC protein 4 (NAC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076724.11e-141NAC domain-containing protein 83-like
SwissprotQ9FY931e-105NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A075ECR20.0A0A075ECR2_ACTCH; NAC protein 4
STRINGcassava4.1_014491m1e-135(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-101NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nieuwenhuizen NJ, et al.
    Natural variation in monoterpene synthesis in kiwifruit: transcriptional regulation of terpene synthases by NAC and ETHYLENE-INSENSITIVE3-like transcription factors.
    Plant Physiol., 2015. 167(4): p. 1243-58
    [PMID:25649633]