PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn181121

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 493aa MW: 56327 Da PI: 9.3824

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn181121	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.4	8.6e-51	6	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+ +y+k+kv + + +l ++i+++d+yk++Pw+Lp+k+ +++ew+fF++rd+ky++g r+nr+++ gyWkatg+dk++l++ + + Achn181121 6 LPPGFRFHPTDEELIIHYMKRKVLQPSSPLVSIIADIDLYKFNPWELPAKAMFGDNEWFFFTPRDRKYPNGARPNRTARCGYWKATGTDKPILNSgGLQ 104 79**************************999***********888889************************************94556 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy+gr pkg ktdWvmheyrl Achn181121 105 CIGVKKALVFYEGRPPKGLKTDWVMHEYRL 134 6*************************97 PP
2	NAM	93.3	4e-29	267	346	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ +e+ew+fFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ +++ vg+kk Lvfykgr p+g ktdW+m eyr+ Achn181121 267 KAMFGESEWFFFSPRDRKYPNGARPNRAASSGYWKATGTDKPILSSyGSQCVGVKKALVFYKGRPPTGIKTDWMMYEYRI 346 4445789************************************988888*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-60	3	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.269	6	162	IPR003441	NAC domain
Pfam	PF02365	1.8E-26	7	134	IPR003441	NAC domain
PROSITE profile	PS51005	36.251	218	373	IPR003441	NAC domain
Pfam	PF02365	3.1E-13	264	346	IPR003441	NAC domain
SuperFamily	SSF101941	3.27E-37	266	373	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MPNPNLPPGF RFHPTDEELI IHYMKRKVLQ PSSPLVSIIA DIDLYKFNPW ELPAKAMFGD 60 NEWFFFTPRD RKYPNGARPN RTARCGYWKA TGTDKPILNS GGLQCIGVKK ALVFYEGRPP 120 KGLKTDWVMH EYRLLDDSSH SLQRLRGSMR LDDWVLCRVR EKNNPPQQIQ EYSEESSFSS 180 ITGLNFTSRV NSIDSVNEVK AAYVESPRDS AEVDQQQLHS FFNFQGGPSQ PIARERNISH 240 SNTKNGSRTL KRSVSVASFG EEFPMNKAMF GESEWFFFSP RDRKYPNGAR PNRAASSGYW 300 KATGTDKPIL SSYGSQCVGV KKALVFYKGR PPTGIKTDWM MYEYRILDDV HHSRRVRGSM 360 RLDDWVLCRV RQKSNTLFPA KESHESDTKI FPQPDFGPFQ EKEIMEKMNY LKTSELSVPD 420 QEGEVVDEHL IFGINSEMQS PTILTMKAAL SKIKRVLSIG AMDEPMPMSS PNKRLCTLNY 480 SNLDKSSIFE FS*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MPNPNLPPGF RFHPTDEELI IHYMKRKVLQ PSSPLVSIIA DIDLYKFNPW ELPAKAMFGD  60
NEWFFFTPRD RKYPNGARPN RTARCGYWKA TGTDKPILNS GGLQCIGVKK ALVFYEGRPP  120
KGLKTDWVMH EYRLLDDSSH SLQRLRGSMR LDDWVLCRVR EKNNPPQQIQ EYSEESSFSS  180
ITGLNFTSRV NSIDSVNEVK AAYVESPRDS AEVDQQQLHS FFNFQGGPSQ PIARERNISH  240
SNTKNGSRTL KRSVSVASFG EEFPMNKAMF GESEWFFFSP RDRKYPNGAR PNRAASSGYW  300
KATGTDKPIL SSYGSQCVGV KKALVFYKGR PPTGIKTDWM MYEYRILDDV HHSRRVRGSM  360
RLDDWVLCRV RQKSNTLFPA KESHESDTKI FPQPDFGPFQ EKEIMEKMNY LKTSELSVPD  420
QEGEVVDEHL IFGINSEMQS PTILTMKAAL SKIKRVLSIG AMDEPMPMSS PNKRLCTLNY  480
SNLDKSSIFE FS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-66	5	375	14	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028107486.1	1e-127	NAC domain-containing protein 72-like
Swissprot	A0SPJ6	2e-73	NAMB2_TRITD; NAC transcription factor NAM-B2
Swissprot	A0SPJ9	2e-73	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A2R6RAM6	0.0	A0A2R6RAM6_ACTCH; NAC transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17425	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	7e-75	NAC domain containing protein 2

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]