PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn181261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 177aa    MW: 19726.6 Da    PI: 9.558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn181261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11658255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                r+  + +E++RR+++++  ++L +l+P+     +s+  +s a+ L +A +YIk+L+
  Achn181261  6 RTDRKTIEKNRRNHMKDLCSKLHSLVPHhH---TSREaMSLADHLGEASNYIKNLE 58
                677889**********************66...66667***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.725457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-13475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-7662No hitNo description
Gene3DG3DSA:4.10.280.101.2E-12672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8758IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-41063IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MEHNPRTDRK TIEKNRRNHM KDLCSKLHSL VPHHHTSREA MSLADHLGEA SNYIKNLEKH  60
LEKMRQKKDR LTGIAKQNIA SMSCAANVGL RPPQVEVHEM GSALEVVLVT GLNYKFMFKE  120
TIRLLHEEGA EIVNAGFSVV DDTVFHTIHS KVGESGLGSG AARISERLKK FAHDAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071437.13e-83transcription factor bHLH162-like isoform X1
SwissprotF4JIJ72e-41BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A2R6RAQ01e-126A0A2R6RAQ0_ACTCH; Transcription factor bHLH36 like
STRINGPOPTR_0011s05320.11e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51052131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-44bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]