PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn181521
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YB
Protein Properties Length: 163aa    MW: 18031 Da    PI: 5.3814
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn181521genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB157.52.1e-4926120397
       NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 eq+r+lPianv+rimk++lP  akisk+ake +qec++efisfvt+easdkc++e+rkt+ngdd++wal++lGf+dy+e++  yl kyre+++e+
  Achn181521  26 EQERLLPIANVGRIMKQTLPPSAKISKEAKERMQECATEFISFVTGEASDKCHKENRKTVNGDDVCWALSSLGFDDYAEAIGRYLCKYREFDRER 120
                 89*****************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-4820138IPR009072Histone-fold
SuperFamilySSF471136.77E-3827147IPR009072Histone-fold
PfamPF008081.7E-253094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.8E-175876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.8E-177795No hitNo description
PRINTSPR006154.8E-1796114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSPLKAHYGG PVGKSEDQSN PNMDDEQERL LPIANVGRIM KQTLPPSAKI SKEAKERMQE  60
CATEFISFVT GEASDKCHKE NRKTVNGDDV CWALSSLGFD DYAEAIGRYL CKYREFDRER  120
ANQNKGRTNG DNDEASSYKG DSSIPLEYRV LEKGGSSLTK PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-4026115392Transcription factor HapC (Eurofung)
4g92_B2e-4026115392Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060827.17e-76nuclear transcription factor Y subunit B-4-like
SwissprotO040271e-55NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2R6RAK31e-100A0A2R6RAK3_ACTCH; Nuclear transcription factor Y subunit B-4 like
STRINGVIT_14s0060g02660.t014e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.15e-58nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]