PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn181551
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 406aa    MW: 46375.2 Da    PI: 4.3066
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn181551genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84e-34291202102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e++ed+++++++sws+  nsfvv d ++fa+++Lp+yFkh nf+SFvRQLn+YgFkkv+ ++         weF+++ F  g+k+ll++ik
    Achn181551  29 FLTKTFEMVEDPSTDSVVSWSRARNSFVVRDLHKFATTLLPRYFKHCNFSSFVRQLNTYGFKKVDPDQ---------WEFANEGFLGGQKHLLKTIK 116
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
    Achn181551 117 RRRN 120
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.43E-3325118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5825118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3625118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.1E-3029118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-182952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDGVTGKEED ITVWPQPMEG LHEMGPPPFL TKTFEMVEDP STDSVVSWSR ARNSFVVRDL  60
HKFATTLLPR YFKHCNFSSF VRQLNTYGFK KVDPDQWEFA NEGFLGGQKH LLKTIKRRRN  120
LSHITPLHGG SGACVELGQY GVEEEIERLT IDRSMLMAEI VKINQQQQSA RDKVIAMEER  180
VQSTERKQQQ MMNFLAKALT SPSFFKQFMD KYVERKEQRG VEIGRKRRLT MSPSVESFQE  240
QEDLVIIESE IETLIMDPKA DPIVTTNGTN MDSVSETIWE KLFCDEIVAG EIGRKRRLAM  300
SPSVESFQEQ EDLVNIESEI ETLIMDPIAD PIVTTNGTDM DSVSETIWEK LFCDEIVAGD  360
DGNQSEFDVE FEDLAAKTTP DWGEDLQDFV DQMEFLRSDT DDLFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-232711818120Heat shock factor protein 1
5d5u_B3e-232711827129Heat shock factor protein 1
5d5v_B3e-232711827129Heat shock factor protein 1
5d5v_D3e-232711827129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028053226.11e-146heat shock factor protein HSF30
SwissprotP411521e-120HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A2R6PHR70.0A0A2R6PHR7_ACTCH; Heat shock factor protein
STRINGEMJ245101e-133(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-107heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]