PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn181831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 364aa    MW: 40443.5 Da    PI: 7.9022
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn181831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-08136159226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                   e+C+ f++ G+Ck Gd+C FaHg
  Achn181831 136 SGEPCPEFRK-GHCKSGDSCEFAHG 159
                 569*******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-6130161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286134161IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6134160IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-6138159IPR000571Zinc finger, CCCH-type
SMARTSM003569.5169192IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.427169193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MMMMMMMNSE APRSHPTVHV PPWNLLDDPT ANMASRAIPV DHNGTATSPT GDITNYSSPK  60
DGQTALHRYL PSNSDSEFQS EEYGIPVDAS ACDYFRMFEF KVRKCARARS HDWTECPYAH  120
AGEKARRRDP RRHNYSGEPC PEFRKGHCKS GDSCEFAHGV FECWLHPTRY RTQPCKDGAH  180
CPRRVCFFAH TPDQLRVLPQ ISDSYDRSPS RLGFDSFGSS PNSTLYSPSD SPPMSPSGSL  240
GVNSVSELAS VMRNLQLGGM RMSMSPPSWG IRMGSGSPRS PATVRPGFLS LPSTPTRTLT  300
RSGLGAFDLW DQTRIEEPVM ERVESGRDLR AKIYAKLSKE NSLDRVDSVS PCPDLGWVSE  360
LVK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058899.11e-160zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-104C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2R6PJ090.0A0A2R6PJ09_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_009784195.11e-149(Nicotiana sylvestris)
STRINGXP_009610482.11e-149(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-94C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]