PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn182081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 416aa    MW: 47501.3 Da    PI: 4.5331
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn182081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind93.13e-29151212102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT......XTTSEEEEESXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks......kekiweFkhksFkkgkke 92 
                   Fl k+ye++ed+ +++++sws+n++sf+v+++ efa+++Lpk+Fkhsnf+SF+RQLn+Y            +       ++++weF+++ F +g+ +
    Achn182081  15 FLAKTYEMVEDPFTDSVVSWSQNNKSFIVWNPPEFARDLLPKFFKHSNFSSFIRQLNTYILLLYVIVYVLFDGqgfrkvDPEQWEFANDDFIRGQPQ 111
                   9**********************************************************75443333322111223333599*************** PP

                   XXXXXXXXXX CS
  HSF_DNA-bind  93 llekikrkks 102
                   ll++i r+k 
    Achn182081 112 LLKNIYRRKA 121
                   *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-355114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3111119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.7E-5311119IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-2815119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-141538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-145365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.8E-146678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MMDEAQCSST ALPPFLAKTY EMVEDPFTDS VVSWSQNNKS FIVWNPPEFA RDLLPKFFKH  60
SNFSSFIRQL NTYILLLYVI VYVLFDGQGF RKVDPEQWEF ANDDFIRGQP QLLKNIYRRK  120
AVHSHSLQSQ QGQVTAVSLL TESERQYYKD EIERLKYDKE SLLLELERHR QEQREIELQT  180
RILTERVQHV DQTQKNMLSS LAQTLQKPGL AMDFVPQSEI RERKRRLRDE SSSEDDPPGT  240
SQIVSRENLN AASALVLNKE SFQQLESSLM FWESIIRDVG PSCIVQDSSL ELDESTSCAD  300
SPTISYTQLN MDIGPKACGI DMNSEPTAPV APKIAASEEQ VARPVTTVPT GVNDMFWEQF  360
LTENPSSSNA LEVKSEIKDL DDQENESIHG KFCWNTRNVN CLPEQLGQLT PAERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-211211926129Heat shock factor protein 1
5d5v_B1e-211211926129Heat shock factor protein 1
5d5v_D1e-211211926129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221226ERKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056900.10.0heat stress transcription factor A-4a-like
TrEMBLA0A2R6Q7190.0A0A2R6Q719_ACTCH; Heat stress transcription factor A-4a like
STRINGXP_009592186.11e-170(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-99heat shock transcription factor A4A