PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn182651
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 195aa    MW: 21939.7 Da    PI: 10.2113
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn182651genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-311059150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Achn182651 10 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 59
                79***********************************************8 PP
2K-box30.61.4e-1178130469
       K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                 s++ s++e +a+ +qqe+akL+ +i+nLq++              +eL++Le +Le+++++iRskK
  Achn182651  78 SNTGSVSELNAQFYQQEAAKLRVQINNLQSS-------------NRELKNLEGRLERGISRIRSKK 130
                 3334499**********************98.............579******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.039262IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-40261IPR002100Transcription factor, MADS-box
CDDcd002656.17E-46379No hitNo description
SuperFamilySSF554552.22E-33378IPR002100Transcription factor, MADS-box
PROSITE patternPS003500458IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-33424IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261158IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-332439IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-333960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC DAEVALIVFS TRGRLYEYAN  60
NSVKGTIERY KKASSGSSNT GSVSELNAQF YQQEAAKLRV QINNLQSSNR ELKNLEGRLE  120
RGISRIRSKK IAEGERVQQM NLMPGGSEYE LMQPPSFDTR NYLQVDGRLQ SDHNSYSRQD  180
QTVLQLVSSP TPNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P9e-21374273Myocyte-specific enhancer factor 2B
1tqe_Q9e-21374273Myocyte-specific enhancer factor 2B
1tqe_R9e-21374273Myocyte-specific enhancer factor 2B
1tqe_S9e-21374273Myocyte-specific enhancer factor 2B
6c9l_A9e-21374273Myocyte-specific enhancer factor 2B
6c9l_B9e-21374273Myocyte-specific enhancer factor 2B
6c9l_C9e-21374273Myocyte-specific enhancer factor 2B
6c9l_D9e-21374273Myocyte-specific enhancer factor 2B
6c9l_E9e-21374273Myocyte-specific enhancer factor 2B
6c9l_F9e-21374273Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1133611e-177HQ113361.1 Actinidia arguta AG mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062146.19e-98floral homeotic protein AGAMOUS-like
RefseqXP_028065683.11e-97floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_028065694.11e-97floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ408725e-90AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLF4ZKM41e-120F4ZKM4_ACTAR; AG
STRINGEOY278728e-88(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.13e-81MIKC_MADS family protein