PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn183171
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 250aa    MW: 29116.6 Da    PI: 4.6232
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn183171genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-173891356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k++++ ++q++ Le+ Fe ++++  e++++LAk++gL+ rqV +WFqNrRa+ k
  Achn183171 38 KKRRLRADQVQFLERSFEVENKLEPEKKAQLAKEIGLKPRQVAIWFQNRRARFK 91
                5568999*********************************************98 PP
2HD-ZIP_I/II118.92.8e-3837127191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl ++qv++LE+sFe e+kLepe+K++la+e+gl+prqva+WFqnrRAR+ktk+lEkdy+aLk++yd+lk++ e + ke+++Lr+e+
   Achn183171  37 EKKRRLRADQVQFLERSFEVENKLEPEKKAQLAKEIGLKPRQVAIWFQNRRARFKTKRLEKDYDALKANYDRLKADYEGFLKEQDRLRNEV 127
                  69*************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.7793393IPR001356Homeobox domain
SMARTSM003891.4E-153697IPR001356Homeobox domain
SuperFamilySSF466891.24E-1737104IPR009057Homeodomain-like
PfamPF000463.8E-153891IPR001356Homeobox domain
CDDcd000863.13E-143894No hitNo description
Gene3DG3DSA:1.10.10.601.0E-1840101IPR009057Homeodomain-like
PRINTSPR000314.9E-66473IPR000047Helix-turn-helix motif
PROSITE patternPS0002706891IPR017970Homeobox, conserved site
PRINTSPR000314.9E-67389IPR000047Helix-turn-helix motif
PfamPF021837.8E-1493134IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MINFEDVGGT NPTDRPFFPL LEKEEDGNED YGFHQPEKKR RLRADQVQFL ERSFEVENKL  60
EPEKKAQLAK EIGLKPRQVA IWFQNRRARF KTKRLEKDYD ALKANYDRLK ADYEGFLKEQ  120
DRLRNEVLLL TNKLILREKD VTISEQSDPI HPMVEEAQKK VPNFAASDPK SETPMVVFKQ  180
EEATSAKSDV LDSEQSDFSQ DEEGDLARTL LTLPCLPKLE DEYYNEPPPN GYNWNFLVEG  240
GQPSWLWPY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081959.11e-90homeobox-leucine zipper protein HAT5-like
TrEMBLA0A2R6RFB51e-179A0A2R6RFB5_ACTCH; Homeobox-leucine zipper protein
STRINGXP_007157405.18e-86(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-41homeobox 1