PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn183711
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 298aa    MW: 33587.5 Da    PI: 8.3552
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn183711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.9e-1274130155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV++++++gr++A+++d  s+n  +r k  + g f+ +e Aa+a++ a+ k++g
  Achn183711  74 SRFRGVSRHRWTGRFEAHLWDkGSWNAtQRkKGKQ-GAFDEEESAARAYDLAAIKYWG 130
                 789******************99889996635555.********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.68E-1874139No hitNo description
PfamPF008471.2E-874130IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-1474139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-1275139IPR001471AP2/ERF domain
PROSITE profilePS5103217.85975138IPR001471AP2/ERF domain
SMARTSM003805.5E-1575144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEMITVVKSE VSPVRRRLCE MEGELPVAKC VKRRRREPNV LGCTDQEDHQ KPQQLQVVDQ  60
SNTTTTTTTV KRSSRFRGVS RHRWTGRFEA HLWDKGSWNA TQRKKGKQGA FDEEESAARA  120
YDLAAIKYWG PTTFTNFPDP RINLEPQPIN TLCGPISSPE PEFTFRSSPY TMGDYGNNPR  180
KQEVLETKMP ISPCNRSPSP TAVGLLLRSN MFRDLVEKNS NVVDDDSEQN DTKNKSQIND  240
GDEFGKFFFN SIGSNPYECS SSSDKLPRLE SPNENALPFY NKAGKSLWNG ALNLPAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11435RRRLCEMEGELPVAKCVKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028095299.11e-61AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2R6RFB41e-123A0A2R6RFB4_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_01s0026g01690.t013e-57(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34402145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-31AP2 family protein