PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn184241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22492.6 Da    PI: 7.6001
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn184241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.64.4e-151564150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+i+ k  r   fskR++ i+KKA+EL++  ++ev vi fs+tgk y ++
  Achn184241 15 KFIQHKGVRINNFSKRKARIFKKASELCTFPGTEVGVIFFSPTGKPYSFA 64
                578888888889*********************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-14766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.208767IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-5929IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-181084IPR002100Transcription factor, MADS-box
CDDcd001202.82E-181066No hitNo description
PfamPF003199.1E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-52944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-54465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MENKHPKNHQ KRGMKFIQHK GVRINNFSKR KARIFKKASE LCTFPGTEVG VIFFSPTGKP  60
YSFAHPNIES VINRFLDQNP SQNYLTTNFG EADDICELNK KYDEVLKQLE AEEEKGKLLD  120
QMEKERISKG GLMAPIEELS LQELEELSIK MKQLQIQLQK HICNQLEEER NEAASSSAIG  180
TTNPSHAIDP FTDGKTK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-27AGAMOUS-like 61