PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn184391

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Nin-like

Protein Properties

Length: 1039aa MW: 115308 Da PI: 5.9718

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn184391	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.3	4.7e-26	607	680	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLg......................vclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF +++kdAAk+Lg vc+T++KriCRq+GI RWP+Rki+++ Achn184391 607 AEKSISLEVLQQYFTGSLKDAAKSLGdfcfkddlateiesltmiltftVCPTTMKRICRQHGITRWPSRKINKV 680 589*********************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.322	593	700	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-23	611	680	IPR003035	RWP-RK domain
SMART	SM00666	3.2E-25	943	1025	IPR000270	PB1 domain
PROSITE profile	PS51745	25.392	943	1025	IPR000270	PB1 domain
Pfam	PF00564	5.8E-19	943	1024	IPR000270	PB1 domain
SuperFamily	SSF54277	3.27E-22	943	1027	No hit	No description
CDD	cd06407	8.05E-38	944	1024	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.8E-26	944	1025	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1039 aa Download sequence Send to blast
MYSGLVILVG FNIGLNIVDH REKTPAKSLQ KMSEADDEYQ TSFRKSREPL MDLVLDGSWP 60 FDQIFSANPT SPFFISSAEQ PFSPLWAFSD DNGDKLAGDA TSTLSGGHRL SEYPRLFSCN 120 PESVTESQAR TGNKRRLSTP CLELTRIDYP DGSCVIKERM TQALRYFKES TEQHVLAQVW 180 APVKNGGGYL LTTSGQPFVL DPHSNELHQY RMVSLMYMFS VDGESDGVLG LPGRVFQQKL 240 PEWTPNVQYY SSKEYPRLTH ALHYNVQGTL ALPVFEPSGQ SCIGVLELIM TSPKINYAPE 300 VDKVCKALEY VVNVLVNQIC NEGRQKALVE ILEILTVVCE THKLPSAQTW VPCRHRSVLA 360 NGGGLKKSCS SFDGSCMGQI CMSTTEVAFY VVDAHMWGFR EACAEHHLQK GQGVAGRAFA 420 SHNSCFCEDI TQFCKTEYPL VHYARMFGLT SSFAICLRSS HTGNDDYILE FFLPPHIRDH 480 RDQRTLLDSI LVTLKQHFWS LRVASGKELE EEGRCIEIIK ASMNEKLDLG LQSDQISQSA 540 ILPPYTEALP NAPEMMNLES REQQLRIEVG AKNSGGCVGG AGGNQNVVSL PEQKNVSKKP 600 ERKRGKAEKS ISLEVLQQYF TGSLKDAAKS LGDFCFKDDL ATEIESLTMI LTFTVCPTTM 660 KRICRQHGIT RWPSRKINKV NRSLSRLKRV IESVQGAEGA FTLTSIATCS LPVAVNPILW 720 PASVNGSNQQ NSAGYKPSEL MEENNESTTL KKHRNHGHDV ATNQMLRDGV LCREEVVHEQ 780 NGFLRELGEG TSRSKTGSGS REESTGTPTS HDSYQGSPYL RNASTPQNDP TISPIHEKYI 840 KIDSSSELLY QSAKELTLSA AFSIPDALIT TEVQEPFGGM LIEDAGSSHN LRNLCPAAEA 900 FLEEQPPEYG WTNPLGAELE PREAMANPAE RMPLFFAGPE VKTMTIKATY KEDIIRFRLS 960 LDSGIVRLKE EVAKRLKLEM GTFDIKYLDD DHEWVLIACD ADLQECVDIS KSSGSNMIRL 1020 LVHDVSANPA SSCESSGR*

Sequence ? help Back to Top

Protein Sequence Length: 1039 aa Download sequence Send to blast

MYSGLVILVG FNIGLNIVDH REKTPAKSLQ KMSEADDEYQ TSFRKSREPL MDLVLDGSWP  60
FDQIFSANPT SPFFISSAEQ PFSPLWAFSD DNGDKLAGDA TSTLSGGHRL SEYPRLFSCN  120
PESVTESQAR TGNKRRLSTP CLELTRIDYP DGSCVIKERM TQALRYFKES TEQHVLAQVW  180
APVKNGGGYL LTTSGQPFVL DPHSNELHQY RMVSLMYMFS VDGESDGVLG LPGRVFQQKL  240
PEWTPNVQYY SSKEYPRLTH ALHYNVQGTL ALPVFEPSGQ SCIGVLELIM TSPKINYAPE  300
VDKVCKALEY VVNVLVNQIC NEGRQKALVE ILEILTVVCE THKLPSAQTW VPCRHRSVLA  360
NGGGLKKSCS SFDGSCMGQI CMSTTEVAFY VVDAHMWGFR EACAEHHLQK GQGVAGRAFA  420
SHNSCFCEDI TQFCKTEYPL VHYARMFGLT SSFAICLRSS HTGNDDYILE FFLPPHIRDH  480
RDQRTLLDSI LVTLKQHFWS LRVASGKELE EEGRCIEIIK ASMNEKLDLG LQSDQISQSA  540
ILPPYTEALP NAPEMMNLES REQQLRIEVG AKNSGGCVGG AGGNQNVVSL PEQKNVSKKP  600
ERKRGKAEKS ISLEVLQQYF TGSLKDAAKS LGDFCFKDDL ATEIESLTMI LTFTVCPTTM  660
KRICRQHGIT RWPSRKINKV NRSLSRLKRV IESVQGAEGA FTLTSIATCS LPVAVNPILW  720
PASVNGSNQQ NSAGYKPSEL MEENNESTTL KKHRNHGHDV ATNQMLRDGV LCREEVVHEQ  780
NGFLRELGEG TSRSKTGSGS REESTGTPTS HDSYQGSPYL RNASTPQNDP TISPIHEKYI  840
KIDSSSELLY QSAKELTLSA AFSIPDALIT TEVQEPFGGM LIEDAGSSHN LRNLCPAAEA  900
FLEEQPPEYG WTNPLGAELE PREAMANPAE RMPLFFAGPE VKTMTIKATY KEDIIRFRLS  960
LDSGIVRLKE EVAKRLKLEM GTFDIKYLDD DHEWVLIACD ADLQECVDIS KSSGSNMIRL  1020
LVHDVSANPA SSCESSGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028082392.1	0.0	protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2R6QJ04	0.0	A0A2R6QJ04_ACTCH; Uncharacterized protein
STRING	VIT_02s0025g02070.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5223	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]