PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn184971
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 242aa    MW: 27640 Da    PI: 5.5944
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn184971genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-088302346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W+ Ia+ ++ gRt++++k++w++
       Achn184971  8 RWSIIAAQLP-GRTDNDIKNYWNT 30
                     4*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.193136IPR017930Myb domain
SuperFamilySSF466891.14E-7636IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-12736IPR009057Homeodomain-like
PfamPF002493.4E-6830IPR001005SANT/Myb domain
CDDcd001672.61E-5832No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MHIGLEQRWS IIAAQLPGRT DNDIKNYWNT RLKKKLLGRR KQSTANRLLK PFDPNGLEDD  60
SCAPVLSNSA LERLQLHMHL QGLQNHFSFS NNTILWPKLN HLQEKMVQTL KYFNQSPSNL  120
VQPAHEQKVD FCEPITKQEY LEISNSKIDD QLGNSSWDIG SNLVDSNIEK ASTFQNDLID  180
GLINNKTIGF QPPEDSVADF DCFKEMECLK ESMIWWSSDH DLEYSKAASS CSWNYGLGYS  240
L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083497.18e-74transcription factor MYB36-like
RefseqXP_028089083.18e-74transcription factor MYB36-like
TrEMBLA0A2R6S1Q61e-171A0A2R6S1Q6_ACTCH; Transcription factor like
STRINGEOY317641e-64(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-23myb domain protein 36