PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn185001

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 354aa MW: 40465.6 Da PI: 5.8209

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn185001	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.2	1e-42	63	188	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 p G+rF+P+d+el+v+yLkkkv +++l+ + +++v++ +++P++L +k+k +ekewyfF++rd+ky++g+r+nr++ +gyWkat +dk ++ +g Achn185001 63 PTGYRFKPHDHELIVHYLKKKVLDETLPP-NKFHDVNLSNYNPETLTAKLKRhGEKEWYFFTPRDRKYPNGNRPNRSAGDGYWKATTSDKVIKF-NGVP 159 89**********************999.77**********9655542778******************************9999.99 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vglkk+Lvfy+g+ p+g kt W+m+ey+l Achn185001 160 VGLKKSLVFYSGKPPNGIKTLWIMQEYKL 188 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-51	57	216	IPR003441	NAC domain
PROSITE profile	PS51005	49.052	62	217	IPR003441	NAC domain
Pfam	PF02365	3.9E-23	63	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEEDPPTQKS PLNNPINHPI DYDSFDEFIN SDYFDSIDPI TDSFTSDVFG DVSMNYDYFD 60 SFPTGYRFKP HDHELIVHYL KKKVLDETLP PNKFHDVNLS NYNPETLTAK LKRHGEKEWY 120 FFTPRDRKYP NGNRPNRSAG DGYWKATTSD KVIKFNGVPV GLKKSLVFYS GKPPNGIKTL 180 WIMQEYKLRD DQLQESKRAG RNGMRLDNWV LCKIYKNKSK SKDTTRIGSV EHVPTEMNVD 240 NQNGEPMPIP MPEMSNVHAQ NGEPMPIPMP EMSNGEPMPI PMPEMSNVNN QNGEPMPIPM 300 PEMSNVHNQN GELMPLSMPE MSNANNLNGE PMPRPIPEIC RQSKWRADST SHA*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEEDPPTQKS PLNNPINHPI DYDSFDEFIN SDYFDSIDPI TDSFTSDVFG DVSMNYDYFD  60
SFPTGYRFKP HDHELIVHYL KKKVLDETLP PNKFHDVNLS NYNPETLTAK LKRHGEKEWY  120
FFTPRDRKYP NGNRPNRSAG DGYWKATTSD KVIKFNGVPV GLKKSLVFYS GKPPNGIKTL  180
WIMQEYKLRD DQLQESKRAG RNGMRLDNWV LCKIYKNKSK SKDTTRIGSV EHVPTEMNVD  240
NQNGEPMPIP MPEMSNVHAQ NGEPMPIPMP EMSNGEPMPI PMPEMSNVNN QNGEPMPIPM  300
PEMSNVHNQN GELMPLSMPE MSNANNLNGE PMPRPIPEIC RQSKWRADST SHA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	61	222	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	61	222	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	61	222	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	61	222	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	61	222	19	173	NAC domain-containing protein 19
3swm_B	2e-49	61	222	19	173	NAC domain-containing protein 19
3swm_C	2e-49	61	222	19	173	NAC domain-containing protein 19
3swm_D	2e-49	61	222	19	173	NAC domain-containing protein 19
3swp_A	2e-49	61	222	19	173	NAC domain-containing protein 19
3swp_B	2e-49	61	222	19	173	NAC domain-containing protein 19
3swp_C	2e-49	61	222	19	173	NAC domain-containing protein 19
3swp_D	2e-49	61	222	19	173	NAC domain-containing protein 19
4dul_A	2e-49	61	222	16	170	NAC domain-containing protein 19
4dul_B	2e-49	61	222	16	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021654834.1	1e-71	NAC transcription factor 47-like
TrEMBL	A0A2R6S1T7	0.0	A0A2R6S1T7_ACTCH; NAC transcription factor
STRING	XP_008227355.1	1e-66	(Prunus mume)
STRING	EMJ15685	9e-68	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	6e-54	NAC family protein