PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn190371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 238aa    MW: 26500.8 Da    PI: 8.4884
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn190371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.11.1e-111111402756
                 HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  27 aeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++++  LA++l+L  rqV vWFqNrRa+ k
  Achn190371 111 EKQKLGLANQLNLRPRQVEVWFQNRRARTK 140
                 5677789*********************98 PP
2HD-ZIP_I/II94.21.4e-301111762692
  HD-ZIP_I/II  26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                   ++K  la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eLr +lk
   Achn190371 111 EKQKLGLANQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTQENTRLQKELQELR-ALK 176
                  689***********************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.76279142IPR001356Homeobox domain
CDDcd000867.91E-8108143No hitNo description
Gene3DG3DSA:1.10.10.601.4E-10111145IPR009057Homeodomain-like
SuperFamilySSF466892.27E-10111151IPR009057Homeodomain-like
PfamPF000462.9E-9111140IPR001356Homeobox domain
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
SMARTSM003401.6E-23142185IPR003106Leucine zipper, homeobox-associated
PfamPF021832.4E-10142176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVSTDLGFCM GFHGRFISQD SEEEKSGSSD PPVQLDLLPF SPVQRTQPPS QLVRFPWLTQ  60
NLLSGPRTGQ GRRPEEEERD EVATRSSPNS TTVSSFQMDF SAYGGGRSKR EKQKLGLANQ  120
LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKKCCETLTQ ENTRLQKELQ ELRALKTSKP  180
FYMQLPATTL TMCPSCERVA STSTAATSAT ENTELALAKS ILCPFTTSPS HAQQGGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2629445e-69AM262944.1 Phillyrea latifolia partial mRNA for type II homeodomain-leucine zipper protein precursor (ophh-61B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848896.12e-83PREDICTED: homeobox-leucine zipper protein HOX11 isoform X1
SwissprotP466652e-53HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2R6QRP51e-140A0A2R6QRP5_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_08s0007g06670.t014e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-52homeobox from Arabidopsis thaliana