PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn190451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 710aa    MW: 78206.4 Da    PI: 8.4369
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn190451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.9e-111669347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqky 47
                     +W t+E++ll++av+++G ++W+++a +++           +t+ +c  +++++
       Achn190451 16 PWGTWEELLLACAVHRHGANRWDSVAIEIQkrsstaslrHLLTPHHCEQKYHDL 69
                     8*****************************999999998778999999999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.52E-51250IPR009057Homeodomain-like
SMARTSM007174.4E-41372IPR001005SANT/Myb domain
PfamPF002494.1E-101669IPR001005SANT/Myb domain
CDDcd001678.58E-61670No hitNo description
SMARTSM002978.0E-12119423IPR001487Bromodomain
CDDcd043691.24E-15323418No hitNo description
Gene3DG3DSA:1.20.920.105.4E-14324422IPR001487Bromodomain
SuperFamilySSF473701.83E-16324421IPR001487Bromodomain
PROSITE profilePS5001412.954333404IPR001487Bromodomain
PfamPF004391.1E-8333408IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MDKPDETTEN REPETPWGTW EELLLACAVH RHGANRWDSV AIEIQKRSST ASLRHLLTPH  60
HCEQKYHDLK RRYAPQNDDA SPASAGDADS VPWLDELRKL RVAELRREVE RYDLSIVSLQ  120
LKVKRLKEER EQSLKEDENG VEKSDLEKSV EREREGEENR EGEIEPESVA GKPVTGEESD  180
RDNQSVNESN STDPKGEDHK TGVEEPEPVR TGEPESTKPV GEGSWNGSSD SIEKGDPVRE  240
SVKAEPEGGM SDSPELWESV AESKGGGGED VAAKESSDVQ SSASKSRKEL GSDKVRSGSS  300
ISGDEPENED QSAAVKRICV KSHSLIDFLE IVRSHKLGSV FERRLESQET PEYRNLIRQH  360
IDFEAIRTRL NDGWYSSCNR KLYRDLLLLV NNAILFFGKE SRESNAANEL RQLISKEMAQ  420
TNLKLDSSAE ERTSTPSLPL SLKPEPEPSD SLLLKPKISG PIIVCRIRSS IAAKASGSSS  480
VAADRKREQK VALLEDKPIL DWKQPNKPPD NTEENLITTK RTRDRFTSGT RSSMKNVKNP  540
SNTIPNKNSE APSSQNQGKG ASSSEHSEPK SEKNTNSPVS VAKKKGAANF LNRIKRGSST  600
NNGPLLDTLK SSTPNSSNSN KGGAEQKKNG NSNAKSDVKK EQPSRRGSGA RQPKEPVSPA  660
KRNVGRPPKR AAAPPPSTMA PVTNKRSREG GDTDAVASRQ GQPKKRSRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062768.10.0cilia- and flagella-associated protein 251-like
TrEMBLA0A2R6QRS30.0A0A2R6QRS3_ACTCH; Transcription activator like
STRINGXP_010257462.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.19e-87DNA-binding bromodomain-containing protein