PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn191201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 200aa    MW: 22729.2 Da    PI: 9.3451
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn191201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.7e-15581321799
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  lp kf+e+h  k  ++++++le e+g ++e  +i  + +    +++GW+ F+ +++L++gD vvF+l++ ++f  +v v+r+
  Achn191201  58 GLPTKFCEDHLPK--TTVQMVLEEENGTEYEAVYI--GERT--GISGGWRAFALDHKLDDGDAVVFELIEPTRF--KVYVVRA 132
                 69********533..5689***************4..4443..399**********************987777..8877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.1E-1244133IPR003340B3 DNA binding domain
PfamPF023625.4E-1357131IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1758135IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1658135IPR015300DNA-binding pseudobarrel domain
CDDcd100179.62E-1859131No hitNo description
PROSITE profilePS5086311.46259133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAKESVNDYE EARKQRVEDN KKRFEQRLAK PKTKCVYTTE PRRSSRARNP VSSYRDDGLP  60
TKFCEDHLPK TTVQMVLEEE NGTEYEAVYI GERTGISGGW RAFALDHKLD DGDAVVFELI  120
EPTRFKVYVV RASNCSTQED DVAVGDRATC NDENTSHEAK ESNKNNSKAE PRRSTRSKKD  180
VGSKKEERSK SSGRKRKKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193197RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077403.14e-59putative B3 domain-containing protein At5g58280
TrEMBLA0A2R6PPL83e-91A0A2R6PPL8_ACTCH; B3 domain-containing protein
STRINGVIT_06s0004g08270.t019e-46(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125102022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-29B3 family protein