PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn191781

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

MYB_related

Protein Properties

Length: 464aa MW: 50610.2 Da PI: 5.4034

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn191781	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	59	84	1	27
TSSS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI 27 r rWT+eE+ ++++a k++G W++I Achn191781 59 RERWTEEEHNKFIEALKLYGRA-WRRI 84 78****************88.99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.56E-6	47	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.0E-6	59	87	IPR009057	Homeodomain-like
Pfam	PF00249	9.1E-6	59	84	IPR001005	SANT/Myb domain
CDD	cd00167	6.96E-4	61	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MAIQDQYGGS QSNTVVPTGN GTSLDVGTHS VNAAKLEEQF LSGNVTPKVR KPYKITKQRE 60 RWTEEEHNKF IEALKLYGRA WRRIEGNGDA SAVQPIEIPA PRPKRKPTHP YPRKLVAPLK 120 TGSLVEEQQR SSASPNLSVS EQENQSSTSV LSAIGSETLG LTDTNTPNGS LSPISSGDGV 180 NPGGFFLSEP NSSPNSSPEE TGSLLEVKSP TSSAPAEQVS VNLELFPQDG AFVKEESSEV 240 ASIQSLKLFG KTVLVTDSQR LSLPAMETCK SLPSFMNDER PVPTPWNLMP TEFSNWNTEG 300 PWNPAAFYYM RFPNENSKPG NGDSGSPLPC WAYYGGMPFP CPPLHYLVPT KAPQASVSGQ 360 TQNREDQKEG SRTSSNTGSA NASDMNWEVE TQSRRLSSDK EEKGQQSTTL VKPSDNLSFS 420 DQRAILDKCL KGFVPYKRCL AERDTSSTIT GAEREEQRIR LCL*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MAIQDQYGGS QSNTVVPTGN GTSLDVGTHS VNAAKLEEQF LSGNVTPKVR KPYKITKQRE  60
RWTEEEHNKF IEALKLYGRA WRRIEGNGDA SAVQPIEIPA PRPKRKPTHP YPRKLVAPLK  120
TGSLVEEQQR SSASPNLSVS EQENQSSTSV LSAIGSETLG LTDTNTPNGS LSPISSGDGV  180
NPGGFFLSEP NSSPNSSPEE TGSLLEVKSP TSSAPAEQVS VNLELFPQDG AFVKEESSEV  240
ASIQSLKLFG KTVLVTDSQR LSLPAMETCK SLPSFMNDER PVPTPWNLMP TEFSNWNTEG  300
PWNPAAFYYM RFPNENSKPG NGDSGSPLPC WAYYGGMPFP CPPLHYLVPT KAPQASVSGQ  360
TQNREDQKEG SRTSSNTGSA NASDMNWEVE TQSRRLSSDK EEKGQQSTTL VKPSDNLSFS  420
DQRAILDKCL KGFVPYKRCL AERDTSSTIT GAEREEQRIR LCL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028094872.1	1e-165	protein REVEILLE 1
TrEMBL	A0A2R6RJ81	0.0	A0A2R6RJ81_ACTCH; Protein REVEILLE like
STRING	VIT_04s0079g00410.t01	1e-130	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3185	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-41	MYB_related family protein