PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn192801
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 344aa    MW: 38856.4 Da    PI: 6.9704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn192801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.53e-15262287126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +k+elC+ ++rtG+C+yGd+C+FaHg
  Achn192801 262 FKMELCNKWQRTGQCPYGDNCQFAHG 287
                 69***********************8 PP
2zf-CCCH18.73.2e-06300324125
                 --S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                 ykte+Cr  +++ +C+yG rC+F H
  Achn192801 300 YKTEICRMVLAGDECPYGHRCHFRH 324
                 9**********55**********77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.1E-18256294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-10258293IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-10261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.633261289IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-12262287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-11295326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-8298328IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.596299327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MKNLEVYGGN NNENSSTDSS PNLFYNPNPS PTDNHSDEID FASFYPSIFP PYSNSLPITP  60
SDCSFDDANN AIATVNHLHE ARFMLECQQL YNRYTMCLAY LQESLKDFDV LSEENDNLRI  120
TNADLIKRLS LLSHATIQNC LLSSGHQPPS FINDFDRLSV RGTLPDSRVS EQVSDISPTS  180
VIEQNRFDRR NVERVTLPKS ISVRSSGYLK TTQRGGGNSG PSRRNRVKSQ SPNGSQRVYV  240
PGGKREAAAA ALEFEVYNQG MFKMELCNKW QRTGQCPYGD NCQFAHGITE LRPVIRQPRY  300
KTEICRMVLA GDECPYGHRC HFRHFLTEEE RLLGPLRLND LRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-19262324466Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071679.11e-179zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A2R6RKQ30.0A0A2R6RKQ3_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_009594882.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77842129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-65C3H family protein