PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn194261

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

S1Fa-like

Protein Properties

Length: 90aa MW: 10077 Da PI: 10.2242

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn194261	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	127.6	3.6e-40	24	89	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + e+kG+nPGlivl++vgglll+fl+gny+ly+yaqk+lPP+kkkP+skkk+k+e+lkqGv++PGe Achn194261 24 NPEVKGFNPGLIVLILVGGLLLTFLLGNYLLYMYAQKTLPPKKKKPISKKKMKKERLKQGVSAPGE 89 569**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	2.9E-39	26	89	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MDYEAEFADH NPPSFDRMEN VIKNPEVKGF NPGLIVLILV GGLLLTFLLG NYLLYMYAQK 60 TLPPKKKKPI SKKKMKKERL KQGVSAPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028079487.1	9e-35	DNA-binding protein S1FA-like
Swissprot	Q7XLX6	3e-15	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A2R6PKJ0	1e-56	A0A2R6PKJ0_ACTCH; DNA-binding protein like
STRING	Lus10023177	9e-33	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3174	22	49

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]