PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn195751
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 513aa    MW: 58127.2 Da    PI: 6.4585
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn195751genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.1e-0789111427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                 ++C f++  G+C+ Gd+C+F Hgp
  Achn195751  89 VPCYFYFN-GFCSKGDQCSFLHGP 111
                 79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.958635IPR000571Zinc finger, CCCH-type
SMARTSM003560.31734IPR000571Zinc finger, CCCH-type
PfamPF156639.4E-11765No hitNo description
PROSITE profilePS5010310.6713763IPR000571Zinc finger, CCCH-type
SMARTSM003560.453962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8485112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-685110IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-486111IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-488111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-590113IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDEELLKRFT DCVYFLASPL TCKKGIECEY RHSEIARLNP RDCWYWLAGS CLNPSCAFRH  60
PPLDAHTEVS SESAPAQYQS TASVNKFSVP CYFYFNGFCS KGDQCSFLHG PPEDATPAWK  120
SSNTASAVNG APPPLENKTS AVSDAGSAPI ETLPNPSEFT SKRSLEKQIN LRADFHLSSL  180
DNVKDQSDSP NMSASECEEA APVRSDTFLP ERGGVIQHQS LLSTDQSSEE LVDGHVERED  240
YLESSPGFDV LVDDDRSENL GYEDDPDNLP AVDREGRGLN GHIPGYDYEN PVEDGPMYPD  300
TRMYDEQERL YASDLFDNEQ RFDYFRNFHG RSREEILDPI MPQKRKFLVT DGHRGVDLRD  360
RLKKRRVIDG RLGTRFSRRN NSALLVDRSR ARFRHLLTDK NPRDSFRQSN SNGHRQQYKE  420
KRRLKRQFLS SEVSKKPVSR KRRSTEESTV FSGPKTLSQI KEEKRKATEN SNSSGRLGHF  480
SSRNASEEFQ GPKPLSEILK EKNKLGPVTD SN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359365DRLKKRR
2420442KRRLKRQFLSSEVSKKPVSRKRR
3438443SRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028069315.10.0zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A2R6R4H70.0A0A2R6R4H7_ACTCH; Zinc finger CCCH domain-containing protein
STRINGVIT_11s0016g04980.t011e-170(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11433911