PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn195891
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 198aa    MW: 22895.8 Da    PI: 9.0905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn195891genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.31.9e-092391148
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +l+++++ +G g+W++++++ g+ R + +c++rw +yl
       Achn195891  2 ILKNYIEAHGEGNWASVSQKSGLMRGGRSCRLRWKNYL 39
                     6999********************************97 PP
2Myb_DNA-binding53.36.5e-174590148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgr++ +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
       Achn195891 45 RGRMSDDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 90
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.2141IPR001005SANT/Myb domain
PROSITE profilePS512949.827139IPR017930Myb domain
PfamPF002491.8E-7239IPR001005SANT/Myb domain
SuperFamilySSF466898.03E-22286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-15246IPR009057Homeodomain-like
CDDcd001673.07E-5239No hitNo description
PROSITE profilePS5129424.3144094IPR017930Myb domain
SMARTSM007178.2E-164492IPR001005SANT/Myb domain
PfamPF002498.0E-154590IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-234793IPR009057Homeodomain-like
CDDcd001672.34E-114790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MILKNYIEAH GEGNWASVSQ KSGLMRGGRS CRLRWKNYLR PNIKRGRMSD DEKDLIIRLH  60
KLLGNRWSLI AGRLPGRTDN EVKNYWNTHL NKKNSQHKTT TLGPKNKKKP QQLPTTQPIC  120
SRNSENDNQE SHGRKDEDIT IKSPQMEDTE SFNFDIEEPS LLLSHNSLFF YEDEPFMPIL  180
DSFLFSEAFR SIGEETT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1879322107B-MYB
1h8a_C2e-1869341127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028098261.11e-100transcription factor MYB82-like
SwissprotQ9LTF74e-58MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A2R6R4I91e-144A0A2R6R4I9_ACTCH; Transcription factor like
STRINGXP_010112475.12e-75(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-60myb domain protein 82