PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn196031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 138aa    MW: 15322.5 Da    PI: 6.1247
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn196031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.61.6e-181458448
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                e++  r+vtfskRr+g++KKAeEL  L++a+vavi fs  g+ y+
  Achn196031 14 ESEAARTVTFSKRRKGLFKKAEELHHLTGADVAVIAFSAAGRPYT 58
                78899***********************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.6E-20162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.31363IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-21473IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-14525IPR002100Transcription factor, MADS-box
PfamPF003198.5E-211458IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-142540IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-144061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MGRGKKKIEI KLKESEAART VTFSKRRKGL FKKAEELHHL TGADVAVIAF SAAGRPYTHG  60
GEDTLDKYLN YCVKKEDQDP DVCGAQVLGS WLEGIKLEEC ESLDHLVAVK EALEEIRDRV  120
FMVTPVDEDF VRSLLAS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RCN33e-95A0A2R6RCN3_ACTCH; MADS-box transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-13AGAMOUS-like 61