PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn196311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CAMTA
Protein Properties Length: 1021aa    MW: 113764 Da    PI: 5.8368
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn196311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.13.4e-53231364116
        CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101
                 e + rwlk+ e++ iL+++++ +lt+e++++p++gsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+np fqrr+yw+
  Achn196311  23 EaQFRWLKPAEVLFILQTYKEDQLTHEPPKKPSNGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNVEALNCYYAHGEQNPDFQRRSYWM 121
                 4488*********************************************************************************************** PP

        CG-1 102 Leeelekivlvhyle 116
                 L+ e e+ivlvhy+e
  Achn196311 122 LDPECEHIVLVHYRE 136
                 *************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.73317143IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7120138IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4723136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.0E-9447538IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.0E-18453537IPR014756Immunoglobulin E-set
PfamPF018333.8E-8453530IPR002909IPT domain
CDDcd006031.40E-4453537No hitNo description
Gene3DG3DSA:1.25.40.205.8E-15650745IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.043651743IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.18E-15654745IPR020683Ankyrin repeat-containing domain
CDDcd002044.68E-14671743No hitNo description
PfamPF127964.6E-8671744IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0013684713IPR002110Ankyrin repeat
PROSITE profilePS5008810.98684716IPR002110Ankyrin repeat
SMARTSM002482000723752IPR002110Ankyrin repeat
SMARTSM0001523801823IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187802831IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.06E-5851912IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001514860882IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.73861890IPR000048IQ motif, EF-hand binding site
PfamPF006120.05864881IPR000048IQ motif, EF-hand binding site
SMARTSM000150.017883905IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.938885908IPR000048IQ motif, EF-hand binding site
PfamPF006121.0E-4886905IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MKICITAISD PIPGYNLLDL NREAQFRWLK PAEVLFILQT YKEDQLTHEP PKKPSNGSLF  60
LFNKRVLRFF RKDGHSWRKK KDGRTVGEAH ERLKVGNVEA LNCYYAHGEQ NPDFQRRSYW  120
MLDPECEHIV LVHYREISEG KHSSGSISQL SPGSLLTFSQ SPSSYTAQHP GSATAISELY  180
DPYQSPGSVE ISSDAVANSN GMDHLDMIER KGESYGSSEL EFSQALRRLE EQLSLNDESL  240
EEIGSFCNGN ENLNDSESII NGQSECAPSV DDLNTLLLQQ QSGGNRKHIH QGMTQQFIGE  300
HKNSLPWKEM MGFSTSSPGA ESEEKNFCTS SENGTLLSYT RCYLLEEQET GRWINFGTHD  360
SCKCNDFPTP DSGANLQFSA SSKYPLSSEN PFTLSTSMFL SQEVDLKFPA YSPVTNTLHT  420
DSDYFTTIFD KGQIGVHLEA DSSLTIAQQQ KFTIREISPD WGYASEATKV VIVGSFLCDP  480
SEGAWTCMFG DHEVPVQIIQ EGVICCLAPP HLPGKVTLCI TSGNQESCSE VREFDYRAQT  540
SSCAQCSSPQ KERTKSPEEL LALVRFAQML LSDPSVEKGD MTESGLDQWG KFKAGEDSWN  600
HVFEALLVGS WTSSSTTDWL LQELLKDKLQ QWLSSRSKGG CDEQGCSLSK KEQGVIHMIS  660
GMGFEWALNP ILSSGVSINF RDINGWTALH WAAHFGREKM VAALIASGAS AGAVTDPNSL  720
DRTGKTPASV AASSGHKGLA GYLSEVALTS HLTSLILQEK ELSKGSPDVE AEIDVINFVQ  780
RNIDTNEDQH SLKDTLAAVR NAAQAAARIQ AAFRAHSFRR RQQKEDASDA ASSVDEYNIL  840
SNDIHRLSVA SKLAFRNPRD YNTAALSIQK KFRGWKGRKD FLAFRQKVVK IQAHVRGHRV  900
RKQYKVICWA VGVLEKVVLR WRRKGAGLRG FRQEMVSIDE SEDEDIIKVF RKQKVEGAID  960
EAFSRVLSMV DSPDARQQYS RVLGRYRQAK AELEGADSDV TSTSQSELFY MENVDAYQYP  1020
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093707.10.0calmodulin-binding transcription activator 4-like
RefseqXP_028093713.10.0calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2R6P3C80.0A0A2R6P3C8_ACTCH; Calmodulin-binding transcription activator like
STRINGVIT_01s0010g03850.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39322037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]