PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn196351
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YC
Protein Properties Length: 136aa    MW: 15336.5 Da    PI: 8.0768
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn196351genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC44.34e-149971198
       NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                 ++t+  + ++P  r+kki+k d+d++++ +ea  l+s   ++f+  l+ +s   a e+kr+t+k   +  av+r + + dfl++  p+
  Achn196351  9 TNNTEAIQPNFPSGRVKKIMKLDKDINKVNSEALFLVSCCTDIFLEFLAEKSARVAIEKKRKTVKLEHLRIAVKRHQpTSDFLLESLPE 97
                3445556899****************************9999999999*************************99764889**998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.65E-171597IPR009072Histone-fold
PfamPF008085.5E-191881IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.9E-191996IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MAEEEEEETN NTEAIQPNFP SGRVKKIMKL DKDINKVNSE ALFLVSCCTD IFLEFLAEKS  60
ARVAIEKKRK TVKLEHLRIA VKRHQPTSDF LLESLPEPPR PTAGDSLAER TRNRKADKPV  120
PAGTCRIDDF FHKSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093396.14e-58DNA polymerase epsilon subunit C
TrEMBLA0A2R6P3A72e-93A0A2R6P3A7_ACTCH; Dr1-associated corepressor like
STRINGXP_010044803.11e-53(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA114352425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-48nuclear factor Y, subunit C13