PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn196641

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 141aa MW: 16620.7 Da PI: 5.8326

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn196641	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.5	6.1e-17	24	88	16	84
trihelix 16 emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 e++ l+++k++k+lW+++ ++mr rgf+rsp++C++kw+nl k+++k k+++++++ + ++ +++ Achn196641 24 ETDALLNTSKSNKHLWDQILARMRGRGFNRSPTRCTDKWRNLLKEFEKAKQSDRSGS-G---KMWCYKE 88 567778999*********************************************983.2...2334555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.179	22	66	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	7.0E-4	23	68	IPR009057	Homeodomain-like
Pfam	PF13837	1.0E-13	24	89	No hit	No description
SuperFamily	SSF46689	5.29E-5	28	68	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MYLPEKPHTI DFYKVEEQQD DDDETDALLN TSKSNKHLWD QILARMRGRG FNRSPTRCTD 60 KWRNLLKEFE KAKQSDRSGS GKMWCYKEIE AFFLEREAPV WGITRAMWLL RSIRICSSPL 120 KDFIFWSSDN EEGGYDITVQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	5e-25	26	88	23	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444419.1	9e-28	PREDICTED: trihelix transcription factor GT-1-like isoform X1
Refseq	XP_008444421.1	9e-28	PREDICTED: trihelix transcription factor GT-1-like isoform X2
Refseq	XP_008444422.1	9e-28	PREDICTED: trihelix transcription factor GT-1-like isoform X3
Refseq	XP_008444423.1	9e-28	PREDICTED: trihelix transcription factor GT-1-like isoform X4
Refseq	XP_021892627.1	5e-28	trihelix transcription factor GT-1-like isoform X4
Swissprot	Q9FX53	1e-25	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2R6QRA7	2e-39	A0A2R6QRA7_ACTCH; Trihelix transcription factor GT-1 like
STRING	XP_008444419.1	4e-27	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	2e-28	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]