PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn197821

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 205aa MW: 23500.4 Da PI: 4.569

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn197821	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	29.3	2.4e-09	1	41	58	98
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 m+s++ye+++ r PvyG++gvi +l +l+q+ +el++ + Achn197821 1 MKSVIYESDMHERFPVYGCCGVICHLYCKLAQVVEELKYEH 41 89*********************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.1E-6	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MKSVIYESDM HERFPVYGCC GVICHLYCKL AQVVEELKYE HVRLAMCGEE WHNLQIVDHH 60 DAPDPTLQFD MNWSGDALMM LHQHPAVHEM PFEHLIMTVN NEDIAKSYWG QQTNYISNNN 120 SVPIQTQFVP SQSFPVQQET KVLDYDDITF DTMADDRQSY IESKEVCELS CKSSLYNNMQ 180 PIDQFASKIN GKSAAACFNL TSFN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028092612.1	2e-59	LOB domain-containing protein 27-like
TrEMBL	A0A2R6P9G8	2e-90	A0A2R6P9G8_ACTCH; LOB domain-containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75