PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn198661
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 908aa    MW: 100727 Da    PI: 6.7344
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn198661genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08455503348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lvd+v+++G g+W+ I r        Rt  ++k++w+++l
       Achn198661 455 PWTLSEVVKLVDGVARYGVGRWSEIKRLAFasySYRTSVDLKDKWRNLL 503
                      8****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.351448507IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-12450507IPR009057Homeodomain-like
SMARTSM007172.0E-9452505IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-16454513IPR009057Homeodomain-like
CDDcd116603.94E-18454504No hitNo description
PfamPF002492.8E-6455503IPR001005SANT/Myb domain
PRINTSPR003267.1E-20602622IPR006073GTP binding domain
TIGRFAMsTIGR002313.3E-15609750IPR005225Small GTP-binding protein domain
CDDcd018962.72E-118610810No hitNo description
PROSITE profilePS5171030.209610827IPR031167OBG-type guanine nucleotide-binding (G) domain
PfamPF019265.7E-16610716IPR006073GTP binding domain
Gene3DG3DSA:3.40.50.3005.7E-32610709IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525406.04E-44610815IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003267.1E-20623641IPR006073GTP binding domain
PRINTSPR003267.1E-20650665IPR006073GTP binding domain
PROSITE patternPS009050652665IPR006074GTP1/OBG, conserved site
PRINTSPR003267.1E-20667685IPR006073GTP binding domain
PfamPF168974.2E-37721812IPR031662GTP binding protein, second domain
Gene3DG3DSA:3.40.50.3005.7E-32776816IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF028245.6E-19819874IPR004095TGS
CDDcd016663.96E-27821874No hitNo description
SuperFamilySSF812711.6E-10821874IPR012676TGS-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MVPATDDEVM EVEDLLEDDK SEIHPVADTG QNVGCASNDE FSSTKTQFDD SEGQCENPEV  60
DTEKSHTQLD TTVELEKLNA GIEETVHLFA TNSNDGRIDQ PESGGECSNP LDGPIENESL  120
VSAVCTNSKP DFSKLEGEIC LDNLSVRELH ETFKATFGRE TSVKDKQWLK RRIAMGLTNS  180
CDISTTTFVI IDNKVVKKGK EGSAKNVEGK LAEVSVTGAV NENCGGLPIG CNNLIENPED  240
VSDERLRNPG AEYDCSVGDL QTEQRSAKRV RKPTKRYIEE LSEVESSEYS GKLVSSVKNS  300
GDVQSSPVSH VRPVRDTWSD GRPVVTRQDS LGGSDVQVPY VCRVRRSRPR ENFMALMELQ  360
PSSMGMATKL AKEALGVRDN KIEKKVFKAR STSGWIQKPP VTESEKDKQY QETKASELEK  420
DAELKHMDSS GYYSDDYTGP VPTAKGGMRR KHHRPWTLSE VVKLVDGVAR YGVGRWSEIK  480
RLAFASYSYR TSVDLKDKWR NLLRASFANS PAEKGSVLGR HKGWRNLMSE PELAGKQRGD  540
RCGEREVLEG DRVGDRCGER EILEGGRVGI KGRGSQFVFG LGSRIGTQNH SSQSPSLWVM  600
LDVLTTDNCV GKSTLLTLLT GTHSEAASYE FTTLTCIPGI IHYNDTKIQL LDLPGIIEGA  660
SEGKGRGRQV IAVSKSSDIV LMVLDASKSE GHRQILTKEL EAVGLRLNKR PPQIYFKKKK  720
TGGISFNSTI PLTHVDEKLC YQILHEYKIH NAEVLFREDA TVDDLIDVIE GNRKYMKCIY  780
VYNKIDVIGI DDVDKLSRQP NSVVISCNLK AGTRQTLVSD RGGCSVEDFC NHIHRSLVKD  840
VKYVLVWGIS ARHYPQHCGL SHVLQDEDVV QIVKKKERED GGRGRFKSHS NAPARISDRE  900
KKAPLKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a9a_A2e-8961087583376RIBOSOME-INTERACTING GTPASE 1
4a9a_B2e-8961087583376RIBOSOME-INTERACTING GTPASE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028073173.10.0uncharacterized protein LOC114275349
TrEMBLA0A2R6PSX60.0A0A2R6PSX6_ACTCH; Telomere repeat-binding protein
STRINGVIT_09s0002g01480.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118812023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.18e-97TRF-like 6