PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn198701
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 203aa    MW: 21924.5 Da    PI: 5.0309
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn198701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE++ l  +v+++G+g Wk I r        ++R+  ++k++w++
       Achn198701  5 KQKWTSEEEDALRAGVAKHGTGKWKNILRDPEfapslTHRSNIDLKDKWRN 55
                     79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.441161IPR017930Myb domain
SuperFamilySSF466891.0E-16259IPR009057Homeodomain-like
SMARTSM007178.4E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-14556IPR009057Homeodomain-like
PfamPF002498.2E-9555IPR001005SANT/Myb domain
CDDcd116606.68E-21656No hitNo description
SuperFamilySSF467851.41E-6105146IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005260.0078105172IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.1E-7106155IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005389.3E-7109156IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGNPKQKWTS EEEDALRAGV AKHGTGKWKN ILRDPEFAPS LTHRSNIDLK DKWRNMSVNI  60
ATQGSKEKSK VPKVKATTNG ENSASAASLA DDEITDDPSK TPQDGKAAPR YNAMIIEALS  120
SVKDSNGSDI GAIVKFIEET VEAAAKNAAY QIAEAENKSF VAAEAMKEAE RVARMAEDSE  180
SLLQLVKEIY EQCSRGEIVL VG*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583000.19e-77telomere repeat-binding factor 4 isoform X2
RefseqXP_028238774.19e-77telomere repeat-binding factor 4-like isoform X2
SwissprotF4I7L14e-45TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A2R6PT705e-96A0A2R6PT70_ACTCH; Telomere repeat-binding factor like
STRINGXP_009795175.12e-59(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-47MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]