PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn199931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27617.1 Da    PI: 6.7473
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn199931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++ rqvtfskRr+g+lKK +ELSvLCda++ +i+fss+gklyeys+
  Achn199931  9 KRIENNTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIVFSSRGKLYEYST 59
                79***********************************************96 PP
2K-box44.56.7e-1675160589
       K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                 +g++ le+ + e+  +el+++++e++nLq ++ +++G dL++ +l++L  LeqqLe++++k+R++K+ +l ++ +e+ +   ++q 
  Achn199931  75 TGTRiLEHDNREQIFNELTRMRNETHNLQLSLERYKGHDLSNAKLEDLDPLEQQLESAINKVRARKETMLDKENQEMYHWLMSNQM 160
                 5566688899999************************************************************9999765544443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.945161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-31281IPR002100Transcription factor, MADS-box
CDDcd002652.12E-44276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-1281171IPR002487Transcription factor, K-box
PROSITE profilePS5129711.48185171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKIEVKR IENNTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIVFSS RGKLYEYSTH  60
PLSMAQIIER YLTTTGTRIL EHDNREQIFN ELTRMRNETH NLQLSLERYK GHDLSNAKLE  120
DLDPLEQQLE SAINKVRARK ETMLDKENQE MYHWLMSNQM QRHQQADQEL DPHQQAMTEL  180
RLVGHEQQVL DQFPFYGEAQ PTSVLDLANV SLQLHTYQLQ PTQPNLQDLA PPNYGTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18171169MEF2C
5f28_B4e-18171169MEF2C
5f28_C4e-18171169MEF2C
5f28_D4e-18171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052104.11e-118MADS-box protein defh21
SwissprotQ9ATE54e-88FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A2R6R3R61e-167A0A2R6R3R6_ACTCH; MADS-box protein like (Fragment)
STRINGXP_009785850.12e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.32e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]