PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn200291

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 262aa MW: 29649.7 Da PI: 10.8463

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn200291	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84	3e-26	140	216	52	128
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++w+fF++r++++a+g r++r+++sgyWkatg+ v+s++++++g++kt+vfykg+ap g+kt+W mheyr+ Achn200291 140 RRDTEQWFFFAPRQEREAHGGRPSRTMASGYWKATGSPGYVYSSDNRVIGVQKTMVFYKGKAPAGRKTKWKMHEYRA 216 456779*********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.23	92	240	IPR003441	NAC domain
SuperFamily	SSF101941	4.58E-30	133	240	IPR003441	NAC domain
Pfam	PF02365	1.1E-12	134	215	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MVHKINDPNQ SPLSRAPGIK LTIRVEISTS STAVIRRCTD HYHKPHNGFL AGPAILSNDH 60 VADRSHSFAT VVQISRKKEQ WMKCHQDIDS IRPKKSSFRS ICATSFKEGE RKWTVSSRSS 120 RFSSSSHGTF QVQLSGKLCR RDTEQWFFFA PRQEREAHGG RPSRTMASGY WKATGSPGYV 180 YSSDNRVIGV QKTMVFYKGK APAGRKTKWK MHEYRAIEQQ AGCAVPKLRH ELSLCRVYVK 240 SGSFRAFDRR PTEAETRDAV P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-23	144	243	71	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-23	144	243	71	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-23	144	243	71	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-23	144	243	71	168	NO APICAL MERISTEM PROTEIN
3swm_A	4e-23	144	243	74	171	NAC domain-containing protein 19
3swm_B	4e-23	144	243	74	171	NAC domain-containing protein 19
3swm_C	4e-23	144	243	74	171	NAC domain-containing protein 19
3swm_D	4e-23	144	243	74	171	NAC domain-containing protein 19
3swp_A	4e-23	144	243	74	171	NAC domain-containing protein 19
3swp_B	4e-23	144	243	74	171	NAC domain-containing protein 19
3swp_C	4e-23	144	243	74	171	NAC domain-containing protein 19
3swp_D	4e-23	144	243	74	171	NAC domain-containing protein 19
4dul_A	4e-23	144	243	71	168	NAC domain-containing protein 19
4dul_B	4e-23	144	243	71	168	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	3e-64	NAC domain containing protein 61