PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn200301

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 237aa MW: 27328.7 Da PI: 7.4345

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn200301	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.1	7.7e-45	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppG+rF Pt+eelv++yL++k+++++ el++vi+ +di+++ePw+Lpk ++ ++++w+fF++r++++a+g r++r+++sgyWkatg+ v+s+ Achn200301 4 MPPGYRFYPTEEELVSFYLRNKLQRNRDELDRVIPVLDIFELEPWHLPKlsgeLCHRDTEQWFFFAPRQEREAHGGRPSRTMASGYWKATGSPSYVYSS 102 79**************************999***********656653344677*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kkt+vfy+g+a +g+kt+W m+eyr+ Achn200301 103 DNRVIGVKKTMVFYEGKAASGRKTKWKMNEYRA 135 *****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-49	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	48.728	4	159	IPR003441	NAC domain
Pfam	PF02365	3.3E-24	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEEMPPGYRF YPTEEELVSF YLRNKLQRNR DELDRVIPVL DIFELEPWHL PKLSGELCHR 60 DTEQWFFFAP RQEREAHGGR PSRTMASGYW KATGSPSYVY SSDNRVIGVK KTMVFYEGKA 120 ASGRKTKWKM NEYRAIEQPA GCAVPKLRNE LSLCRVYVIS GSFRAFDRRP VGSETGRTVI 180 QQIRGDQSTQ NTRTVEKTSS SESSSSEVDQ FEFSQTNLGM FNGLEPLLEW DQLNWV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-34	4	157	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-34	4	157	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-34	4	157	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-34	4	157	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-34	4	157	20	166	NAC domain-containing protein 19
3swm_B	2e-34	4	157	20	166	NAC domain-containing protein 19
3swm_C	2e-34	4	157	20	166	NAC domain-containing protein 19
3swm_D	2e-34	4	157	20	166	NAC domain-containing protein 19
3swp_A	2e-34	4	157	20	166	NAC domain-containing protein 19
3swp_B	2e-34	4	157	20	166	NAC domain-containing protein 19
3swp_C	2e-34	4	157	20	166	NAC domain-containing protein 19
3swp_D	2e-34	4	157	20	166	NAC domain-containing protein 19
4dul_A	2e-34	4	157	17	163	NAC domain-containing protein 19
4dul_B	2e-34	4	157	17	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028083537.1	1e-115	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-87	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2R6P747	1e-175	A0A2R6P747_ACTCH; NAC domain-containing protein
STRING	cassava4.1_014914m	1e-103	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	9e-88	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]