PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn200451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YB
Protein Properties Length: 149aa    MW: 16512.6 Da    PI: 6.0715
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn200451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB47.93.3e-1515109594
       NF-YB   5 drflPianvsrimkkvlPanak...is..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                  ++lP a v r++k+ l + +k   is  ++a     e +  fi ++++ a+d c++ kr+tin+dd++ al ++ f ++v plk+ l+++r  +
  Achn200451  15 TEELPKAIVRRVVKEKLSQLSKegdISvfREALVAFSESARIFIHYLSATANDVCKESKRQTINADDVFKALEEIEFPEFVVPLKASLEEFRRKN 109
                 5789**********98876554222553368888899******************************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.4E-3214142IPR009072Histone-fold
PfamPF008084.4E-111786IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.19E-2518134IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAEKAATVEK AVAETEELPK AIVRRVVKEK LSQLSKEGDI SVFREALVAF SESARIFIHY  60
LSATANDVCK ESKRQTINAD DVFKALEEIE FPEFVVPLKA SLEEFRRKNA GKRSASKAKE  120
ANKKKKKESP VENGTEDKQD ENGAPDDN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105126RRKNAGKRSASKAKEANKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028057252.11e-71DNA polymerase epsilon subunit 3
TrEMBLA0A2R6P7556e-99A0A2R6P755_ACTCH; DNA polymerase epsilon subunit like
STRINGXP_010245113.15e-61(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-40nuclear factor Y, subunit B11