PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn200711
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 440aa    MW: 45440.5 Da    PI: 7.3154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn200711genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-055981123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  Achn200711 59 FVCEICNKGFQRDQNLQLHRRGH 81
                89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.16E-55782No hitNo description
Gene3DG3DSA:3.30.160.601.4E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.8E-55981IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MPTELENSST ASGEASVSSS GNQIVPPPAK KKRNLPGMPD PDSEVIALSP KSLLATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVRKRVY VCPEPSRDSF ITHRAFCDAL  120
AKESVKAQTV AASSPPPSPP PPLQTALSPA REMLTSVLAI QSAASSLLCP ILDPFELLIS  180
TIPDLPENPN PNPNGIIDDA PVTTGLTGSC SNTSSIGSTS SNVFASLFAS TTAPPSMQPQ  240
EPGFTSLIRA MAPPPPPPER ASNLTPPSLS TEPISLCLAT NHGLSIFGTA GQERRQYAPP  300
PQPAMSATAL LQKAAQMGAA ATNASLLRGF GLVSSTSSAS EWDRRQIEQE SGSLAAGLGL  360
GIPCDGGSGL KELMMGTPSV FGPKQTTLDL LGLGMAVGGG PNSGLSALMT SIGGGLDVAT  420
AAASLGGGEF TGKDMGRNS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076239.11e-169zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ73e-91IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A2R6S2F50.0A0A2R6S2F5_ACTCH; Protein indeterminate-domain like
STRINGVIT_04s0023g01430.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.13e-48C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]