PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn201411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 171aa    MW: 19193.8 Da    PI: 8.1128
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn201411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.5e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien +nrqvt+skRrngi+KKA+EL vLCda+v++i++s+tgkl+ey+s
  Achn201411  9 KRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTGKLHEYIS 59
                79***********************************************86 PP
2K-box34.58.7e-13571023075
       K-box  30 nLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                  +  ++ + +Ge+L++Ls+ +L+ Leq++  sl+ iR++K + l e
  Achn201411  57 YISPNISQKMGEELNDLSVHDLRGLEQKMSASLTIIRDRKVRNLEE 102
                 56678999********************************887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.604161IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.08E-37264No hitNo description
SuperFamilySSF554551.83E-31277IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.59841127IPR002487Transcription factor, K-box
PfamPF014861.7E-861102IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MGRGKIEIKR IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TGKLHEYISP  60
NISQKMGEEL NDLSVHDLRG LEQKMSASLT IIRDRKVRNL EERHGNLLLD FEAKCDLAPQ  120
YELVENEGDY DSAVAFANGV SNLYAFRLQP NHPNLHHHGG GCGSHDLRLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16164164MEF2C
5f28_B3e-16164164MEF2C
5f28_C3e-16164164MEF2C
5f28_D3e-16164164MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ1133581e-121HQ113358.1 Actinidia chinensis AP3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267937.11e-85agamous-like MADS-box protein TM6
SwissprotQ003J21e-86TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLF4ZKM12e-99F4ZKM1_ACTCH; AP3
STRINGVIT_04s0023g02820.t015e-83(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23142451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-45MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Varkonyi-Gasic E, et al.
    Identification and characterization of flowering genes in kiwifruit: sequence conservation and role in kiwifruit flower development.
    BMC Plant Biol., 2011. 11: p. 72
    [PMID:21521532]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]