PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn201491

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

BBR-BPC

Protein Properties

Length: 276aa MW: 30682.6 Da PI: 9.5242

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn201491	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	312.2	1.8e-95	1	275	32	301
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlse.pqledsave 125 +aerda+irern+al e++ a+aerdm lqrd+a+aern a+ erd l+al+++e s++ s ++++ +++++ k++++ q++ p+l++++++ Achn201491 1 MAERDAAIRERNMALDERRRAFAERDMVMLQRDAAIAERNTAIEERDRVLAALQFRESSVNenymSPHSPKDEIVRKGKHLHHQYQVHStPHLAETTYD 99 78****************************************************9998888665556678899999999998885545999999888 PP GAGA_bind 126 lreee...klealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrq 221 +e +++ + +++ + +++k++k + k + +kk+k+++k ++ ++++ + +d++ + l+ln+v +Dest+PvP+CsCtGa++ Achn201491 100 PSEIPsssPFQSTGVASNTAKPQKVKQPK---EIKGTSTKKSKSPRKGKRGKEQDLGGDDEDPDGPFVVLTDSLGLNQVIFDESTMPVPICSCTGAPQP 195 44444000334444444444444444444...33334444444444444455556666666678899999999********************** PP GAGA_bind 222 CYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 CYkWGnGGWqSaCCtttiSvyPLP+++++r+aR++grKmS+gaf klL++LaaeG+d +p+DLkdhWAkHGtn++ t++ Achn201491 196 CYKWGNGGWQSACCTTTISVYPLPQMSNKRHARVGGRKMSGGAFAKLLNRLAAEGHDPYTPLDLKDHWAKHGTNRYRTLK 275 **************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.5E-97	1	275	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	9.0E-82	1	275	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MAERDAAIRE RNMALDERRR AFAERDMVML QRDAAIAERN TAIEERDRVL AALQFRESSV 60 NENYMSPHSP KDEIVRKGKH LHHQYQVHST PHLAETTYDP SEIPSSSPFQ STGVASNTAK 120 PQKVKQPKEI KGTSTKKSKS PRKGKRGKEQ DLGGDDEDPD GPFVVLTDSL GLNQVIFDES 180 TMPVPICSCT GAPQPCYKWG NGGWQSACCT TTISVYPLPQ MSNKRHARVG GRKMSGGAFA 240 KLLNRLAAEG HDPYTPLDLK DHWAKHGTNR YRTLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028117377.1	1e-153	protein BASIC PENTACYSTEINE6-like
Refseq	XP_028117378.1	1e-153	protein BASIC PENTACYSTEINE6-like
Refseq	XP_028117379.1	1e-153	protein BASIC PENTACYSTEINE6-like
Swissprot	Q8L999	1e-87	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A2R6R5R7	0.0	A0A2R6R5R7_ACTCH; Protein BASIC like (Fragment)
STRING	XP_009789611.1	1e-116	(Nicotiana sylvestris)
STRING	XP_009611977.1	1e-116	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	2e-83	basic pentacysteine 6