PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn203091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 200aa    MW: 22304.4 Da    PI: 8.9986
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn203091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00186890123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ C++ F++   L  H  +H
  Achn203091 68 FECKTCNRQFPSFQALGGHRASH 90
                89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.09E-966138No hitNo description
PfamPF139123.4E-136792IPR007087Zinc finger, C2H2
SMARTSM003550.166890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8276895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
PfamPF139127.4E-10115140IPR007087Zinc finger, C2H2
SMARTSM003550.5116138IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182116143IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAEDSWKNTW ARQSRLVTLT QLGMKRGREE DIETLKTMAN CLVLLSRGSS GTESASTSFD  60
SQHSCRVFEC KTCNRQFPSF QALGGHRASH KKPRLMDRDS NQRSQLESLP AKPKTHECSI  120
CGLEFAIGQA LGGHMRRHRA AATSSESQSP ELPLFPSQVP VVKRSNSRRV LCLDLNLTPL  180
ENGLDFPFEK VTPMLHCYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126907.12e-67zinc finger protein ZAT8-like
TrEMBLA0A2R6PL771e-128A0A2R6PL77_ACTCH; Zinc finger protein
STRINGVIT_13s0019g00480.t012e-63(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-43C2H2 family protein