PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn203981
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 394aa    MW: 43782.8 Da    PI: 8.2722
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn203981genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.32.4e-172583357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k t++t+eq+e+Le++F+++++p+ ++r+++ ++      L+ +q+kvWFqNrR +ek+
  Achn203981 25 KYTRYTAEQVEVLEKVFAECPKPTSSDRQKMIHNYsilsILEPKQIKVWFQNRRCREKH 83
                789*****************************999889899****************95 PP
2bZIP_123.41.3e-07771231864
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                 rr+R++ k+e  +L+   k+L+a Nk L +e+++l+k+v++l se+e
  Achn203981  77 RRCREKHKKEANNLQSVNKKLTAANKLLMEENDRLQKQVSRLVSENE 123
                 9*****************************************99985 PP
3START145.93.9e-461643712204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ +   Wv+++ ++ g + + ++  s++++g a+rasg+v  ++a lv+e+l+d+  W ++++k e++++   g  g+++l+++++
  Achn203981 164 VAEETMAEFFLKATGTLVDWVQLPGMKLGSDHVGTINISRNCNGVAARASGLVSLEPA-LVMEILKDRSSWCRDCKKLEVVAKFPAGngGTIELIYMQF 261
                 789*******************************************************.9999999988****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++lvp Rdf+++Ry+ +l++g++v+++ S +s    p     s++ Ra++l Sg+l++p ++g+s++++v+h dl++ +++++lr+l++s+   ++
  Achn203981 262 YAPTTLVPaRDFWILRYSSTLEDGSHVVCEKSMSSSGIGPGpfaASHFTRAKMLASGYLVRPYEGGGSTIHIVDHLDLEALTVPEMLRPLYESSKLVAQ 360
                 ************************************99999999***************************************************9999 PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 +++ at  +++
  Achn203981 361 RMTAATESHHR 371
                 99988876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3862084IPR001356Homeobox domain
SMARTSM003893.9E-162288IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-182383IPR009057Homeodomain-like
SuperFamilySSF466896.42E-162486IPR009057Homeodomain-like
CDDcd000864.59E-172585No hitNo description
PfamPF000469.2E-152583IPR001356Homeobox domain
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
CDDcd146862.16E-677116No hitNo description
Gene3DG3DSA:1.20.5.1708.6E-484128No hitNo description
PROSITE profilePS5084825.951154355IPR002913START domain
SMARTSM002341.1E-36163373IPR002913START domain
PfamPF018521.1E-43164371IPR002913START domain
SuperFamilySSF559614.94E-31165352No hitNo description
Gene3DG3DSA:3.30.530.202.0E-17202346IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGGSHGGRGS KRSNGSGDPH VDSGKYTRYT AEQVEVLEKV FAECPKPTSS DRQKMIHNYS  60
ILSILEPKQI KVWFQNRRCR EKHKKEANNL QSVNKKLTAA NKLLMEENDR LQKQVSRLVS  120
ENEYIRQQVE NITLDVNDTS CEPAVNSPQY SLRASNDPSG LFLVAEETMA EFFLKATGTL  180
VDWVQLPGMK LGSDHVGTIN ISRNCNGVAA RASGLVSLEP ALVMEILKDR SSWCRDCKKL  240
EVVAKFPAGN GGTIELIYMQ FYAPTTLVPA RDFWILRYSS TLEDGSHVVC EKSMSSSGIG  300
PGPFAASHFT RAKMLASGYL VRPYEGGGST IHIVDHLDLE ALTVPEMLRP LYESSKLVAQ  360
RMTAATESHH RSRTWTYEAM TKWLTADALQ LSY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083976.10.0homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE431e-172REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2R6PKZ30.0A0A2R6PKZ3_ACTCH; Homeobox-leucine zipper protein like
STRINGXP_010264677.11e-176(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.11e-174HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]