PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn204031
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 1430aa    MW: 158809 Da    PI: 5.9978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn204031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001413171342123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                  ++C    C +sF+++ +L  H r+ +
  Achn204031 1317 HRCDleGCRMSFKTRAHLLLHKRNrC 1342
                  789999****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.3E-141555IPR003349JmjN domain
PROSITE profilePS5118313.6611657IPR003349JmjN domain
PfamPF023754.8E-141750IPR003349JmjN domain
PROSITE profilePS5118432.903283452IPR003347JmjC domain
SMARTSM005581.2E-45283452IPR003347JmjC domain
SuperFamilySSF511973.57E-26284449No hitNo description
PfamPF023735.4E-36316435IPR003347JmjC domain
SMARTSM003551413171339IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0313401369IPR007087Zinc finger, C2H2
SMARTSM003550.06613401364IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-413411368IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013421364IPR007087Zinc finger, C2H2
SuperFamilySSF576672.82E-913581398No hitNo description
Gene3DG3DSA:3.30.160.605.7E-1013691394IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002813701394IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.65513701399IPR007087Zinc finger, C2H2
PROSITE patternPS00028013721394IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-713881422No hitNo description
Gene3DG3DSA:3.30.160.602.1E-913951423IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.314001426IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014021426IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1430 aa     Download sequence    Send to blast
MRDVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA SVFGICKVIP PLPKPSKKYV  60
VSNLNKSLLK CPELGRDINL GGTESGNEAN DGEVRAVFTT RQQELGQNAK TTKKVVHPQP  120
PAVRKLVWQS GEVYTLEQFE LKSKAFAKNQ LGLVRDVSPL VIEALFWKAS SEKPIHIEYA  180
NDVPGSGFGE PEGSYRYFHR LRRRRRTFNR NTGGYNSGKY QVNSMISYCE NKEESTRNSP  240
NSSRETSKVS ISLPTILSNE TSQFSNQKSS NASKEMQGSA GWKLSNCPWN LQVIARSPGS  300
LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSLNF LHTGSPKTWY AVPGDYAFAF  360
EEVIRNQGYG GNIDRLAALT LLGEKTTLLS PEVVVESGIP CCRLIQNPGE FVVTFPRAYH  420
VGFSHGFNCG EAANFGTSKW LNVAKEAAVR RAAMNHLPML SHQQLLYLLT MSFASRVPRS  480
LLPGARSSRL RDRQKEEREL SVKKAFIEDI LNENNLLTIL LGKNSSYHVV LWDLESLPSP  540
RQDPELCSNV ATVETAPKKD TCYENKNNQD LFSEMSLYME TVNDLYADCD DLSCNFQVDS  600
GALACVACGI LGFPFMSVVQ PSERASMDLQ YVALSKPLEF HSPAVLDHMV EGFVSDGLND  660
KIERNDSNSL RQLNEASSSA ESTNSMVLSS VDLSTSHNLS PPPKDLPVSS EAKFEKGWSA  720
TRGFLRPRLF CLEHAIQIEE MLHSKGGANV LVICHSDFQK INAHVAAVAE EIGSFFGYNE  780
ISLDDASQED LNLIDIAIDG EEHDESGEDW TSKLSINLRH CVKVRKNSAS KQVQHALALG  840
GLFSDPTPGS NTSNLKWPSR KSRSKRNINH SVHIKSSESI GLDNPVQGKP SEIEVMGAKL  900
DDTVVRKEGK LIQYSRKSFK SKPSDSAAPV VHVQEVVSVA DCGGPDEHVK NISRNNLCNI  960
EDTGKKPSGL GVLGSNGESE LRHDSGVLVS IGDSSGNSVP SQIADSLIAP ASEVENSEAQ  1020
LEENLEEMIV DVKATSGSMT GDGYEIEHET KVDESIQETE IFYTEKYSGS LSTAVESTNS  1080
ELQHDSGVLV SIRDFSGNSV SSQIAVSLLA PASEVGNSEA QLEENLEEMI VEVKATSDSV  1140
TRDGSEIEHE TKVDESIQAT EIFYAEKSSG SLSTAVESIE NSDMQRENQN VEEITVVNLA  1200
RMDDSEGQCS IHENPCLADE KELENNGFTE VCPRSPARNG NKRRRNVELQ IQDQLDFNSF  1260
IRSPCERLRP RAAKDSKRGG IESNEMFEEK PAAKNARKPS DDFPSRKGKK ENQKGSHRCD  1320
LEGCRMSFKT RAHLLLHKRN RCPHEGCGKK FSSHKYAVLH QRVHDDDRPL KCPWEGCTMS  1380
FKWAWARTEH IRVHTGERPY ECKVEGCVLT FRFISDFNRH RRKTGHYVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-54284466160346Transcription factor jumonji (Jmj) family protein
6ip4_A1e-54284466160346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195205RYFHRLRRRRR
2201206RRRRRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4792521e-98AM479252.2 Vitis vinifera contig VV78X066822.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071343.10.0probable lysine-specific demethylase ELF6
TrEMBLA0A2R6RTT00.0A0A2R6RTT0_ACTCH; Lysine-specific demethylase (Fragment)
STRINGXP_009589507.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48351721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein