PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn204181
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 550aa    MW: 61322.2 Da    PI: 4.4201
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn204181genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.64.1e-52121391128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 l+pGfrFhPtd+el+ +yLk+kv gk+++l ++i+e+diyk+ePwdLp k k+k+++ ewyfFs  dkky +g r+nrat++gyWk+tgkd++vl+ k+
  Achn204181  12 LAPGFRFHPTDQELIGYYLKRKVCGKPFRL-DAISEIDIYKSEPWDLPgKsKLKSRDLEWYFFSALDKKYGNGWRTNRATERGYWKTTGKDRPVLH-KS 108
                 579***************************.99***************6347777888**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++vg+kktLv++ grap ge+t+Wvmhey+l
  Achn204181 109 RTVGMKKTLVYHIGRAPWGERTNWVMHEYKL 139
                 9****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-618163IPR003441NAC domain
PROSITE profilePS5100556.9212163IPR003441NAC domain
PfamPF023653.6E-2714139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDLDPAPAAT SLAPGFRFHP TDQELIGYYL KRKVCGKPFR LDAISEIDIY KSEPWDLPGK  60
SKLKSRDLEW YFFSALDKKY GNGWRTNRAT ERGYWKTTGK DRPVLHKSRT VGMKKTLVYH  120
IGRAPWGERT NWVMHEYKLV DEELEKTGNV QKDALVLCKI FQKSGSGPKT GEQYGAPFVE  180
EEWEDDELVM VPGKKVADEL TVGDDAYLDG NDLEQILGAD IPSEDVPLPL SFYYEDDNGY  240
VQEPVDFDDD SQKLLLDMGG SYCAPEQPDG QHLFDFPVQN DIYTKPVRHE YIGEPSNTVD  300
SADADYLLDE PFMDANDTTQ FDDGSFLETN DLSNPVKTKS SGFDMVEEYL TFFDADDNNS  360
PYMTLDSSKM IGNENLDSHQ TSLTQKCVNG GTQQETMGGQ QLLQGHDIDV ASTSKKEPGK  420
YGSEIQHPFM KQASCMLSSK DAALQSSSTA HSSSSIRVTA GIIHIRNITS TGNGTYWSLS  480
KHVDVSIVLS FGLSYDDSSY ASLESMDDTL LGKAGSTSSW GWFYLIFLWF LILSLSFKIG  540
TCVYAGKAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-461116916171NO APICAL MERISTEM PROTEIN
1ut4_B1e-461116916171NO APICAL MERISTEM PROTEIN
1ut7_A1e-461116916171NO APICAL MERISTEM PROTEIN
1ut7_B1e-461116916171NO APICAL MERISTEM PROTEIN
3swm_A1e-461116919174NAC domain-containing protein 19
3swm_B1e-461116919174NAC domain-containing protein 19
3swm_C1e-461116919174NAC domain-containing protein 19
3swm_D1e-461116919174NAC domain-containing protein 19
3swp_A1e-461116919174NAC domain-containing protein 19
3swp_B1e-461116919174NAC domain-containing protein 19
3swp_C1e-461116919174NAC domain-containing protein 19
3swp_D1e-461116919174NAC domain-containing protein 19
3ulx_A1e-4661699174Stress-induced transcription factor NAC1
4dul_A1e-461116916171NAC domain-containing protein 19
4dul_B1e-461116916171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125950.10.0NAC domain-containing protein 78-like
TrEMBLA0A2R6PKW20.0A0A2R6PKW2_ACTCH; NAC domain-containing protein
STRINGVIT_13s0019g05240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-123NAC domain containing protein 2