PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn204621
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 694aa    MW: 76456.1 Da    PI: 6.8473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn204621genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12150197355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR++i ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Achn204621 150 QEHIIAERKRREKISQRFIALSAIIPGL-----KKMDKASVLGGAINYLKKLQ 197
                 5799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10150197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-17151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.19E-13152201No hitNo description
SMARTSM003537.4E-15153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0005783Cellular Componentendoplasmic reticulum
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MGMDDSAFIH QWPINSLDEL STVTVEDSFE ESFHNSFSHQ MFSLKRSPDT SHSGIDQPSK  60
MQKTNSWNSS GTHHVSNSQA TSSPNQVPLA NSNYGNQFGL LKPKEDALSP KNITTFPSDT  120
LAFGGSFGNQ NYVFKASHGA KRISTNPNNQ EHIIAERKRR EKISQRFIAL SAIIPGLKKM  180
DKASVLGGAI NYLKKLQDQV KTLEEQTKKK PIESVVTVRK YELCAKGENS SSDENFSGGP  240
YDDPLPEIEA RVCENNVLIK IHCEKRKGVL QKTIAELEKI HLSIANSSVL AFGSSALNIT  300
IVAQDLKEAI VKGLGFQADD FKISGFDLRD LLVGQSVAYE FDVEIGNKVV PLKLLEDVNR  360
WEYVDLPIFR EEDVLRSVEE NGLVERRKME RGLPVLAPFQ LAGPMELWIQ DAKDMRLSLP  420
HDVDAGELRK VILADGAVVT VKGARSVSLR HPIELPLPLN RTHNDFASGL LSLAEYLRHA  480
SRTQDALLSL RIVGPTSLTS PSSSSLSSNN KLKLKRLAPG LVELSSPSKA KPMEPVSVID  540
LQGEATSLLT PDRFTTLWPL TSINSSNSNL RGFEVLLSSV LGPKANEAGS FKLLKADVSA  600
RTFVKIGFGV EKKLKEGDEF DSESFPEWRT KPETVRMHFE VLAKVEGDKV VAERVMQVDP  660
VMVEDSVAPN VLFGNTTMSK IPIVHPPPNP FSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERKRRE
2156161RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126693.10.0uncharacterized protein LOC114323323
TrEMBLA0A2R6RC910.0A0A2R6RC91_ACTCH; A-agglutinin anchorage subunit like
STRINGSolyc01g106470.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-49bHLH family protein