PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn204981
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 681aa    MW: 79151.5 Da    PI: 8.5191
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn204981genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.13.4e-1942149190
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                 k+Y+ Y+++ GF + +++s+k  kr++ +t+  fvC kegk  ++ kk                 +k++++ ++ ++gC+a+l++k+ k + kw+vt +
  Achn204981  42 KYYEVYGRQNGFCIYTRTSSKGqKRSDDVTNVLFVCAKEGKYVPKAKKdgvegnderieddkvlPNKRKKNCSTAKCGCNAHLRIKRVKwSLKWKVTVF 140
                 69***********987776665499999****************99999*************998999999999************************* PP

        FAR1  82 eleHnHela 90 
                 ++ HnH+l+
  Achn204981 141 DNAHNHQLV 149
                 *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1642149IPR004330FAR1 DNA binding domain
PfamPF105516.9E-19199270IPR018289MULE transposase domain
PROSITE profilePS5096610.163457493IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-6458490IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011468495IPR006564Zinc finger, PMZ-type
SuperFamilySSF577562.49E-5634657IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.103.0E-4636656IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MEESFGLDEF EVEDLHTLNN DVEMLEAPLS GISFETIEEA RKYYEVYGRQ NGFCIYTRTS  60
SKGQKRSDDV TNVLFVCAKE GKYVPKAKKD GVEGNDERIE DDKVLPNKRK KNCSTAKCGC  120
NAHLRIKRVK WSLKWKVTVF DNAHNHQLVT PSKRMKMKSN RHMPKSIKDL TEAFHRENFQ  180
ISKVASIFGG EYIGFDNRDC YNHLRNFGCA LLQDETELTF LWLFETWLEA IGGRAPTSII  240
TDQDLAMKGA IAKVFPNTRH RLRIWHIKKK FVEKLSQVYY KRSKFKKEVK KCIWKTYKKE  300
DFEERWMALI KEYGLETNEW LQQLYAIRES WVPVYNRGTF FAGMNTTGRS EGVNSFFDGF  360
VTSTTNLKEF VVKYEQALKK IVKRESDEDY ESEHKFRIVN EDEFLLKHAA KVYTRNVFNK  420
FKDEISEVFR YKVEDVGDTN RFQSFVVKSK VYEIEKFIVT LDSQNYEARC ECQNFEFVGI  480
LCTHILKVFV RLDIDAIPDH FILPRWRQKA NKFRIIDSEE LVHDDGKEES EALRLGHMCQ  540
ESTKLACLAA PSNEAYTIYI KTMNGLFEKL IKVTSYVPPM DVCLEKDNVY TTEPSQILIS  600
DPNISQTKGI KKDATGKDAS IQFGRLKSSI EMALNKKKRK CNLCKKLGHD KRTCPENPMS  660
KTYKALEEGS QNSESEPEIT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280286KRSKFKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412171.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_020417035.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A251PRW60.0A0A251PRW6_PRUPE; Uncharacterized protein
STRINGXP_008219733.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-77FAR1-related sequence 5