PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn205451
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 182aa    MW: 19990.5 Da    PI: 4.7493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn205451genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-201970156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa a++aa++ l+g+
  Achn205451 19 SIYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAATAYDAAALHLRGH 70
                57*****999.**********8...557**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-131970IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-231978IPR016177DNA-binding domain
CDDcd000183.06E-221979No hitNo description
PROSITE profilePS5103223.0642077IPR001471AP2/ERF domain
SMARTSM003804.6E-372083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-322078IPR001471AP2/ERF domain
PRINTSPR003673.8E-102132IPR001471AP2/ERF domain
PRINTSPR003673.8E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEGYSSNNYV GGAAGGARSI YRGVRKRKWG KWVSEIREPG KKTRIWLGSF ETPEMAATAY  60
DAAALHLRGH GARLNFPELA HSLPLPWGPS AEDVRLAAQE AALRFQNPSS CFEACFSSSN  120
LAPVTVGLSP SQIQAINESP LDSPKMWMDL TGVMLEERAV FSKDVEMDEW DEITDDSLWD  180
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-172177360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-172182668ATERF1
3gcc_A7e-172182668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894545.13e-73ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-58ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2R6QYU21e-116A0A2R6QYU2_ACTCH; Ethylene-responsive transcription factor
STRINGPOPTR_0013s10340.11e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-54ERF family protein