PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn205631
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 218aa    MW: 23761.5 Da    PI: 5.5834
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn205631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-174695255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g
  Achn205631 46 IYRGVRKRS-WGKWVSEIREPRK---KSRIWLGSFVTPEMAARAHDVAAIAIKG 95
                69****888.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-114595IPR001471AP2/ERF domain
CDDcd000185.61E-3345105No hitNo description
SMARTSM003805.3E-3746109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3146104IPR001471AP2/ERF domain
PROSITE profilePS5103222.52446103IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2146104IPR016177DNA-binding domain
PRINTSPR003671.0E-94758IPR001471AP2/ERF domain
PRINTSPR003671.0E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGLVVGLECE EQTTSSTSST IEATATPSVS ITLKKVQKSD GEKHPIYRGV RKRSWGKWVS  60
EIREPRKKSR IWLGSFVTPE MAARAHDVAA IAIKGQSAHL NFPDLVHELP RPASKSPKDI  120
QAAAAKAAVL DASRSHGAEA EPSQAEWTSS QSLDSSTGGS STSPIRQTDD PFFDLPDLFL  180
NLGHCTDDLH YMLTWQLTGD EPFGGEFWPD QDPFLWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1841103972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028077791.16e-79ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ73e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2R6QNQ11e-156A0A2R6QNQ1_ACTCH; Ethylene-responsive transcription factor TINY like
STRINGEOY242811e-58(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]